Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   QMZ12_RS08775 Genome accession   NZ_CP125738
Coordinates   1646950..1647252 (-) Length   100 a.a.
NCBI ID   WP_002875928.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2217     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1641950..1652252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ12_RS08740 (QMZ12_08735) - 1642363..1643124 (+) 762 WP_002852748.1 ATP-binding protein -
  QMZ12_RS08745 (QMZ12_08740) - 1643121..1643807 (+) 687 WP_002852847.1 endonuclease III domain-containing protein -
  QMZ12_RS08750 (QMZ12_08745) thiD 1643804..1644616 (+) 813 WP_002869542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMZ12_RS08755 (QMZ12_08750) thiE 1644606..1645238 (+) 633 WP_002852670.1 thiamine phosphate synthase -
  QMZ12_RS08760 (QMZ12_08755) hemD 1645216..1645845 (+) 630 WP_002869541.1 uroporphyrinogen-III synthase -
  QMZ12_RS08765 (QMZ12_08760) - 1645842..1646294 (-) 453 WP_002859148.1 hypothetical protein -
  QMZ12_RS08770 (QMZ12_08765) - 1646291..1646953 (-) 663 WP_002858296.1 hypothetical protein -
  QMZ12_RS08775 (QMZ12_08770) ctsT 1646950..1647252 (-) 303 WP_002875928.1 hypothetical protein Machinery gene
  QMZ12_RS08780 (QMZ12_08775) proC 1647249..1647980 (-) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  QMZ12_RS08785 (QMZ12_08780) fliW 1647980..1648369 (-) 390 WP_002852982.1 flagellar assembly protein FliW -
  QMZ12_RS08790 (QMZ12_08785) - 1648530..1649177 (+) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  QMZ12_RS08795 (QMZ12_08790) lon 1649194..1651569 (+) 2376 WP_002852988.1 endopeptidase La -
  QMZ12_RS08800 (QMZ12_08795) rpsR 1651629..1651889 (-) 261 WP_002853032.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12161.32 Da        Isoelectric Point: 9.0653

>NTDB_id=832615 QMZ12_RS08775 WP_002875928.1 1646950..1647252(-) (ctsT) [Campylobacter jejuni strain MS2217]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFKRLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=832615 QMZ12_RS08775 WP_002875928.1 1646950..1647252(-) (ctsT) [Campylobacter jejuni strain MS2217]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTAAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

98

100

0.98