Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QMZ11_RS05140 Genome accession   NZ_CP125737
Coordinates   989218..989655 (-) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain MS2191     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 984218..994655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ11_RS05125 (QMZ11_05125) ispG 984761..985834 (-) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  QMZ11_RS05130 (QMZ11_05130) cipA 985980..987373 (+) 1394 Protein_994 DUF2972 domain-containing protein -
  QMZ11_RS05135 (QMZ11_05135) priA 987383..989236 (-) 1854 WP_002888182.1 primosomal protein N' -
  QMZ11_RS05140 (QMZ11_05140) Cj0683 989218..989655 (-) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMZ11_RS05145 (QMZ11_05145) - 989652..989894 (-) 243 WP_002854947.1 hypothetical protein -
  QMZ11_RS05150 (QMZ11_05150) - 989884..990114 (-) 231 WP_002852327.1 hypothetical protein -
  QMZ11_RS05155 (QMZ11_05155) uvrB 990268..992241 (+) 1974 WP_002888183.1 excinuclease ABC subunit UvrB -
  QMZ11_RS05160 (QMZ11_05160) - 992343..992984 (-) 642 WP_234744382.1 DUF4118 domain-containing protein -
  QMZ11_RS05165 (QMZ11_05165) - 993008..994159 (-) 1152 WP_234744381.1 sensor histidine kinase KdpD -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=832583 QMZ11_RS05140 WP_002852324.1 989218..989655(-) (Cj0683) [Campylobacter jejuni strain MS2191]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=832583 QMZ11_RS05140 WP_002852324.1 989218..989655(-) (Cj0683) [Campylobacter jejuni strain MS2191]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTGTCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1