Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QMZ11_RS02815 Genome accession   NZ_CP125737
Coordinates   540378..541337 (-) Length   319 a.a.
NCBI ID   WP_002869618.1    Uniprot ID   -
Organism   Campylobacter jejuni strain MS2191     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 537509..572160 540378..541337 within 0


Gene organization within MGE regions


Location: 537509..572160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMZ11_RS02800 (QMZ11_02795) rfaD 537509..538462 (+) 954 WP_002867398.1 ADP-glyceromanno-heptose 6-epimerase -
  QMZ11_RS02805 (QMZ11_02800) rfaE1 538455..539840 (+) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  QMZ11_RS02810 (QMZ11_02805) gmhA 539837..540397 (+) 561 WP_002869619.1 D-sedoheptulose 7-phosphate isomerase -
  QMZ11_RS02815 (QMZ11_02810) waaF 540378..541337 (-) 960 WP_002869618.1 lipopolysaccharide heptosyltransferase II Regulator
  QMZ11_RS02820 (QMZ11_02815) waaV 541396..542214 (+) 819 WP_002869617.1 glycosyltransferase family 2 protein -
  QMZ11_RS02825 (QMZ11_02820) yibB 542217..543176 (-) 960 WP_002869615.1 protein YibB -
  QMZ11_RS02830 (QMZ11_02825) wlaTB 543173..544129 (-) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  QMZ11_RS02835 (QMZ11_02830) - 544122..544895 (-) 774 WP_002869611.1 glycosyltransferase family 25 protein -
  QMZ11_RS02840 - 544966..545989 (+) 1024 Protein_552 hypothetical protein -
  QMZ11_RS02845 (QMZ11_02850) - 545986..547245 (+) 1260 WP_002869603.1 DUF2972 domain-containing protein -
  QMZ11_RS02850 (QMZ11_02855) wlaRG 547272..548357 (-) 1086 WP_025998025.1 class E lipooligosaccharide biosynthesis aminotransferase WlaRG -
  QMZ11_RS02855 (QMZ11_02860) - 548323..549375 (-) 1053 WP_002869601.1 glycosyltransferase family 2 protein -
  QMZ11_RS02860 (QMZ11_02865) - 549388..550452 (-) 1065 WP_002869599.1 glycosyltransferase family 2 protein -
  QMZ11_RS02865 - 550471..550728 (-) 258 Protein_557 hypothetical protein -
  QMZ11_RS02870 (QMZ11_02870) - 550749..551276 (-) 528 WP_002869598.1 GNAT family N-acetyltransferase -
  QMZ11_RS02875 (QMZ11_02875) - 551298..551741 (-) 444 WP_020247173.1 N-acetyltransferase -
  QMZ11_RS02880 (QMZ11_02880) wlaRB 551731..552135 (-) 405 WP_002860228.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB -
  QMZ11_RS02885 (QMZ11_02885) wlaRA 552132..552581 (-) 450 WP_002912325.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA -
  QMZ11_RS02890 (QMZ11_02890) rfbB 552584..553615 (-) 1032 WP_002860226.1 dTDP-glucose 4,6-dehydratase -
  QMZ11_RS02895 (QMZ11_02895) rfbA 553615..554493 (-) 879 WP_002869595.1 glucose-1-phosphate thymidylyltransferase RfbA -
  QMZ11_RS02900 (QMZ11_02900) - 554504..555205 (-) 702 WP_002869594.1 glycosyltransferase family 2 protein -
  QMZ11_RS02905 (QMZ11_02905) htrB 555202..556080 (-) 879 WP_052789826.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  QMZ11_RS02910 (QMZ11_02910) waaC 556070..557098 (-) 1029 WP_020247040.1 lipopolysaccharide heptosyltransferase I -
  QMZ11_RS02915 (QMZ11_02915) - 557165..557959 (+) 795 WP_020247039.1 3'-5' exonuclease -
  QMZ11_RS02920 (QMZ11_02920) galE 558018..559004 (+) 987 WP_002874249.1 UDP-glucose 4-epimerase GalE -
  QMZ11_RS02925 (QMZ11_02925) pglK 558998..560692 (+) 1695 WP_052789827.1 ABC-type lipopolysaccharide transporter PglK -
  QMZ11_RS02930 (QMZ11_02930) pglH 560689..561768 (+) 1080 WP_079268903.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  QMZ11_RS02935 (QMZ11_02935) pglI 561761..562690 (+) 930 WP_002860218.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  QMZ11_RS02940 (QMZ11_02940) pglJ 562678..563775 (+) 1098 WP_004308592.1 N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase -
  QMZ11_RS02945 (QMZ11_02945) pglB 563779..565920 (+) 2142 WP_002860216.1 undecaprenyl-diphosphooligosaccharide--protein glycotransferase -
  QMZ11_RS02950 (QMZ11_02950) pglA 565930..567060 (+) 1131 WP_004308596.1 N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase -
  QMZ11_RS02955 (QMZ11_02955) pglC 567053..567655 (+) 603 WP_002852766.1 undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase -
  QMZ11_RS02960 (QMZ11_02960) pglD 567642..568232 (+) 591 WP_004308598.1 UDP-N-acetylbacillosamine N-acetyltransferase -
  QMZ11_RS02965 (QMZ11_02965) pglE 568330..569490 (+) 1161 WP_002852877.1 UDP-N-acetylbacillosamine transaminase -
  QMZ11_RS02970 (QMZ11_02970) pglF 569492..571267 (+) 1776 WP_004308601.1 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) -
  QMZ11_RS02975 (QMZ11_02975) pglG 571267..572160 (+) 894 WP_002856519.1 PDC sensor domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36850.61 Da        Isoelectric Point: 10.3923

>NTDB_id=832578 QMZ11_RS02815 WP_002869618.1 540378..541337(-) (waaF) [Campylobacter jejuni strain MS2191]
MKIFIHLPTWLGDAVMASPALYVIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNRKKILGLNPGA
SFGSAKRWDASYFAKVALNFNQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEAKNLLKNPHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=832578 QMZ11_RS02815 WP_002869618.1 540378..541337(-) (waaF) [Campylobacter jejuni strain MS2191]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGTTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATCGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAACCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAAAAATTTACTTAAAAACCCTCATCTATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.357

100

0.944