Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   U0320_RS06930 Genome accession   NZ_CP139868
Coordinates   1394447..1395187 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GP11     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389447..1400187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0320_RS06905 (U0320_06900) hemH 1390323..1391246 (-) 924 WP_000162881.1 ferrochelatase -
  U0320_RS06910 (U0320_06905) hemE 1391304..1392341 (-) 1038 WP_000233526.1 uroporphyrinogen decarboxylase -
  U0320_RS06915 (U0320_06910) - 1392331..1392441 (-) 111 WP_001790154.1 hypothetical protein -
  U0320_RS06920 (U0320_06915) traP 1392604..1393107 (+) 504 WP_000737976.1 signal transduction protein TRAP -
  U0320_RS06925 (U0320_06920) ecsB 1393231..1394454 (-) 1224 WP_001245769.1 ABC transporter permease EcsB -
  U0320_RS06930 (U0320_06925) pptA 1394447..1395187 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein EcsA Regulator
  U0320_RS06935 (U0320_06930) - 1395321..1395743 (+) 423 WP_045176861.1 HIT family protein -
  U0320_RS06940 (U0320_06935) - 1395885..1396250 (+) 366 WP_000648118.1 YtxH domain-containing protein -
  U0320_RS06945 (U0320_06940) - 1396983..1397541 (+) 559 Protein_1342 DUF3267 domain-containing protein -
  U0320_RS06950 (U0320_06945) - 1397746..1398708 (+) 963 WP_000782121.1 foldase protein PrsA -
  U0320_RS06955 (U0320_06950) yhaM 1398829..1399770 (-) 942 WP_001244171.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=832555 U0320_RS06930 WP_000216874.1 1394447..1395187(-) (pptA) [Staphylococcus aureus strain GP11]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=832555 U0320_RS06930 WP_000216874.1 1394447..1395187(-) (pptA) [Staphylococcus aureus strain GP11]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATTGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCTCCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGCCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAACGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTACTGTGATCGTTTTATCATACTTGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACATTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545