Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   U0320_RS03735 Genome accession   NZ_CP139868
Coordinates   739589..740740 (+) Length   383 a.a.
NCBI ID   WP_000020363.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GP11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 734589..745740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0320_RS03710 (U0320_03705) yfmH 735419..736705 (+) 1287 WP_000664779.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  U0320_RS03715 (U0320_03710) ymfI 736705..737409 (+) 705 WP_000646234.1 elongation factor P 5-aminopentanone reductase -
  U0320_RS03720 (U0320_03715) - 737514..738341 (+) 828 WP_000214890.1 YmfK family protein -
  U0320_RS03725 (U0320_03720) - 738360..738752 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  U0320_RS03730 (U0320_03725) pgsA 738786..739364 (+) 579 WP_001025093.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  U0320_RS03735 (U0320_03730) cinA 739589..740740 (+) 1152 WP_000020363.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  U0320_RS03740 (U0320_03735) recA 740905..741948 (+) 1044 WP_000368166.1 recombinase RecA Machinery gene
  U0320_RS03745 (U0320_03740) rny 742302..743861 (+) 1560 WP_001050913.1 ribonuclease Y -
  U0320_RS03750 (U0320_03745) - 744158..744373 (-) 216 WP_000026308.1 hypothetical protein -
  U0320_RS03755 (U0320_03750) - 744547..745344 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43233.53 Da        Isoelectric Point: 6.1914

>NTDB_id=832525 U0320_RS03735 WP_000020363.1 739589..740740(+) (cinA) [Staphylococcus aureus strain GP11]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLTNHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENLVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=832525 U0320_RS03735 WP_000020363.1 739589..740740(+) (cinA) [Staphylococcus aureus strain GP11]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTAACAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACCTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.146

100

0.431