Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   U0450_RS10415 Genome accession   NZ_CP139863
Coordinates   2011839..2013506 (+) Length   555 a.a.
NCBI ID   WP_000923596.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006839..2018506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS10380 - 2007049..2007324 (+) 276 WP_000436713.1 bacteriocin immunity protein -
  U0450_RS10385 udk 2007432..2008070 (+) 639 WP_001181378.1 uridine kinase -
  U0450_RS10390 xseA 2008198..2009538 (+) 1341 WP_050212880.1 exodeoxyribonuclease VII large subunit -
  U0450_RS10395 - 2009516..2009728 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  U0450_RS10400 - 2009725..2010600 (+) 876 WP_000743808.1 polyprenyl synthetase family protein -
  U0450_RS10405 - 2010593..2011408 (+) 816 WP_001041073.1 TlyA family RNA methyltransferase -
  U0450_RS10410 - 2011401..2011832 (+) 432 WP_001034415.1 arginine repressor -
  U0450_RS10415 recN 2011839..2013506 (+) 1668 WP_000923596.1 DNA repair protein RecN Machinery gene
  U0450_RS10420 - 2013508..2014236 (+) 729 WP_000133339.1 metallophosphoesterase family protein -
  U0450_RS10425 lepA 2014315..2016138 (+) 1824 WP_001047212.1 translation elongation factor 4 -
  U0450_RS10430 - 2016219..2016551 (-) 333 WP_000693253.1 hypothetical protein -
  U0450_RS10435 - 2016731..2017207 (+) 477 Protein_2012 PTS sugar transporter subunit IIA -
  U0450_RS10440 - 2017245..2017547 (+) 303 WP_000590559.1 PTS sugar transporter subunit IIB -
  U0450_RS10445 - 2017555..2018359 (+) 805 Protein_2014 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62865.32 Da        Isoelectric Point: 4.6798

>NTDB_id=832495 U0450_RS10415 WP_000923596.1 2011839..2013506(+) (recN) [Streptococcus pneumoniae strain 15P2112]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMMLGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRTIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLDLNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNKMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=832495 U0450_RS10415 WP_000923596.1 2011839..2013506(+) (recN) [Streptococcus pneumoniae strain 15P2112]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCTATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATGTTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGTCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAACTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGATCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCCATGAATGACATGGAAAGTGTCGAAGAGTATGACCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTCATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATAAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44