Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QMO72_RS11795 Genome accession   NZ_CP125718
Coordinates   2414935..2416305 (-) Length   456 a.a.
NCBI ID   WP_103266069.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2409935..2421305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS11780 (QMO72_11780) cysE 2410960..2411601 (-) 642 WP_069824881.1 serine O-acetyltransferase -
  QMO72_RS11785 (QMO72_11785) gltX 2411951..2413405 (-) 1455 WP_103266071.1 glutamate--tRNA ligase -
  QMO72_RS11790 (QMO72_11790) - 2413799..2414857 (-) 1059 WP_103266070.1 PIN/TRAM domain-containing protein -
  QMO72_RS11795 (QMO72_11795) radA 2414935..2416305 (-) 1371 WP_103266069.1 DNA repair protein RadA Machinery gene
  QMO72_RS11800 (QMO72_11800) - 2416679..2419141 (-) 2463 WP_069824874.1 ATP-dependent Clp protease ATP-binding subunit -
  QMO72_RS11805 (QMO72_11805) - 2419156..2420166 (-) 1011 WP_103266068.1 protein arginine kinase -
  QMO72_RS11810 (QMO72_11810) - 2420159..2420710 (-) 552 WP_046837688.1 UvrB/UvrC motif-containing protein -
  QMO72_RS11815 (QMO72_11815) - 2420729..2421190 (-) 462 WP_046837687.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50190.63 Da        Isoelectric Point: 7.4326

>NTDB_id=832481 QMO72_RS11795 WP_103266069.1 2414935..2416305(-) (radA) [Staphylococcus casei strain DSM 15096]
MAKKKVIFECMACGYQSPKWMGKCPNCGGWNQMEEVVEQKTASPKHGVRTRDNVSKVQKLNDIKQETTPRVKSKSDEFNR
VLGGGIVNGSLVLIGGDPGIGKSTLLLQICAALSQSHNVLYITGEESLSQTKLRAERLDEDSSQLNVFAETDLEIIHETV
KQLKPDLLVVDSIQTIFHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
EHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVANPSEMFLEERSTNVPGSTIVSTMEGTRPLLIEVQALVTPTTFNNP
RRMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLGIVVATASSFKDQAVDGLDCFIGEVGLTGEV
RRVSRIEQRVQEAAKLGFKRVIIPETNIGGWQFPSDIKVIGVKSVNDALRYALAKQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=832481 QMO72_RS11795 WP_103266069.1 2414935..2416305(-) (radA) [Staphylococcus casei strain DSM 15096]
TTGGCCAAAAAGAAAGTGATTTTCGAATGTATGGCGTGTGGTTATCAGTCACCAAAATGGATGGGAAAATGTCCAAATTG
TGGTGGTTGGAATCAAATGGAAGAGGTTGTCGAGCAAAAGACAGCAAGTCCGAAGCACGGCGTACGAACTCGCGATAATG
TTTCTAAAGTACAGAAGTTAAACGACATCAAACAAGAAACTACACCACGTGTTAAGAGTAAGTCAGATGAATTTAATCGC
GTGTTAGGTGGCGGGATTGTAAATGGTTCATTAGTCTTGATTGGTGGGGACCCTGGTATAGGGAAATCCACATTATTATT
ACAAATTTGTGCAGCGTTATCACAGTCACATAATGTCTTATATATCACTGGTGAAGAATCATTAAGCCAAACGAAATTGA
GGGCAGAAAGATTGGATGAGGATTCAAGTCAGTTAAATGTGTTTGCTGAAACAGATTTGGAAATTATACATGAAACCGTA
AAACAATTAAAACCTGATTTACTTGTTGTCGATTCTATCCAAACGATATTTCATCCTGAAATTAGTTCAGCACCTGGTTC
CGTTTCGCAAGTCAGAGAGAGCACCCAAAGCCTTATGAACATTGCTAAACAAATGAATATCGCAACATTTATTGTCGGGC
ATGTTACAAAAGAAGGTCAAATTGCTGGTCCCCGCCTATTAGAACACATGGTGGATACTGTTCTATATTTTGAAGGTGAT
GAACATCATGCCTATCGTATTTTAAGAGCGGTAAAAAACCGTTTTGGTTCTACAAATGAAATGGGTATTTTTGAAATGAA
GCAAAGTGGATTAAAAGGCGTTGCAAACCCTTCTGAAATGTTTTTAGAAGAACGGTCAACTAACGTGCCAGGTTCTACAA
TTGTTTCTACTATGGAAGGTACGAGACCGTTATTGATAGAAGTACAAGCATTAGTCACTCCTACTACTTTTAATAATCCA
CGACGTATGGCTACAGGTATTGATCATAATCGTTTGAGTTTACTCATGGCTGTATTAGAAAAGAAAGAAAATTATTTACT
TCAGCAACAAGATGCTTATATTAAAGTTGCTGGTGGTGTAAGATTAACCGAACCGGCAGTCGACTTAGGTATCGTTGTAG
CCACAGCTTCAAGCTTTAAAGATCAAGCCGTAGATGGTTTAGATTGCTTTATCGGTGAGGTCGGCTTGACCGGAGAAGTA
AGACGTGTATCACGCATTGAACAACGTGTACAAGAAGCGGCGAAATTAGGTTTTAAACGTGTCATTATTCCAGAGACAAA
TATAGGCGGTTGGCAATTTCCAAGTGATATTAAAGTTATAGGTGTCAAAAGTGTAAACGACGCTTTGAGATACGCTTTAG
CTAAACAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(68-219)

Subunit ChlI of Mg-chelatase (ChlI)

(356-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.217

100

0.658
  radA Streptococcus pneumoniae Rx1

58.811

99.561

0.586
  radA Streptococcus pneumoniae D39

58.811

99.561

0.586
  radA Streptococcus pneumoniae R6

58.811

99.561

0.586
  radA Streptococcus pneumoniae TIGR4

58.811

99.561

0.586
  radA Streptococcus mitis SK321

58.811

99.561

0.586
  radA Streptococcus mitis NCTC 12261

58.811

99.561

0.586