Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMO72_RS10645 Genome accession   NZ_CP125718
Coordinates   2183289..2184257 (-) Length   322 a.a.
NCBI ID   WP_069823589.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2181540..2216452 2183289..2184257 within 0


Gene organization within MGE regions


Location: 2181540..2216452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS10635 (QMO72_10635) - 2181540..2182343 (-) 804 WP_069823591.1 ATP-binding cassette domain-containing protein -
  QMO72_RS10640 (QMO72_10640) - 2182340..2183299 (-) 960 WP_103267694.1 iron chelate uptake ABC transporter family permease subunit -
  QMO72_RS10645 (QMO72_10645) ceuB 2183289..2184257 (-) 969 WP_069823589.1 ABC transporter permease Machinery gene
  QMO72_RS10650 (QMO72_10650) nrdF 2184745..2185713 (-) 969 WP_103266784.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  QMO72_RS10655 (QMO72_10655) nrdE 2185821..2187926 (-) 2106 WP_069823587.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  QMO72_RS10660 (QMO72_10660) nrdI 2187889..2188287 (-) 399 WP_069823586.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  QMO72_RS10665 (QMO72_10665) - 2189002..2189889 (+) 888 WP_103266783.1 DMT family transporter -
  QMO72_RS10670 (QMO72_10670) queF 2189904..2190404 (+) 501 WP_046837183.1 preQ(1) synthase -
  QMO72_RS10675 (QMO72_10675) - 2190711..2192225 (+) 1515 WP_103266781.1 peptide MFS transporter -
  QMO72_RS10680 (QMO72_10680) - 2192461..2193966 (+) 1506 WP_103266780.1 peptide MFS transporter -
  QMO72_RS10685 (QMO72_10685) - 2194077..2195018 (+) 942 WP_103266779.1 diacylglycerol kinase family protein -
  QMO72_RS10690 (QMO72_10690) - 2195153..2195701 (-) 549 WP_046837179.1 5'-3'-deoxyribonucleotidase -
  QMO72_RS10695 (QMO72_10695) hisC 2195978..2197033 (-) 1056 WP_069823580.1 histidinol-phosphate transaminase -
  QMO72_RS10700 (QMO72_10700) - 2197222..2198736 (-) 1515 WP_103266777.1 ABC transporter permease/substrate-binding protein -
  QMO72_RS10705 (QMO72_10705) - 2198736..2199698 (-) 963 WP_103266776.1 ABC transporter ATP-binding protein -
  QMO72_RS10710 (QMO72_10710) recQ 2200034..2201812 (-) 1779 WP_103266774.1 DNA helicase RecQ -
  QMO72_RS10715 (QMO72_10715) - 2201826..2203706 (-) 1881 WP_103266773.1 ABC-F family ATP-binding cassette domain-containing protein -
  QMO72_RS10720 (QMO72_10720) - 2203819..2204637 (+) 819 WP_103266771.1 ZIP family metal transporter -
  QMO72_RS10725 (QMO72_10725) ltaS 2204790..2206730 (-) 1941 WP_103266770.1 polyglycerol-phosphate lipoteichoic acid synthase LtaS -
  QMO72_RS10730 (QMO72_10730) - 2207509..2208513 (-) 1005 WP_103266769.1 biotin-dependent carboxyltransferase family protein -
  QMO72_RS10735 (QMO72_10735) pxpB 2208501..2209208 (-) 708 WP_103266767.1 5-oxoprolinase subunit PxpB -
  QMO72_RS10740 (QMO72_10740) - 2209685..2210293 (-) 609 WP_103266764.1 aminotransferase class IV -
  QMO72_RS10745 (QMO72_10745) - 2210293..2211432 (-) 1140 WP_103266763.1 anthranilate synthase component I family protein -
  QMO72_RS10750 (QMO72_10750) - 2211416..2212009 (-) 594 WP_103266761.1 aminodeoxychorismate/anthranilate synthase component II -
  QMO72_RS10755 (QMO72_10755) queC 2212264..2212935 (+) 672 WP_103266760.1 7-cyano-7-deazaguanine synthase QueC -
  QMO72_RS10760 (QMO72_10760) queD 2212937..2213362 (+) 426 WP_103266759.1 6-carboxytetrahydropterin synthase QueD -
  QMO72_RS10765 (QMO72_10765) queE 2213355..2214071 (+) 717 WP_103266757.1 7-carboxy-7-deazaguanine synthase QueE -
  QMO72_RS10770 (QMO72_10770) - 2214365..2214961 (+) 597 WP_103266756.1 hypothetical protein -
  QMO72_RS10775 (QMO72_10775) - 2215022..2215276 (+) 255 WP_069823563.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  QMO72_RS10780 (QMO72_10780) - 2215376..2216452 (-) 1077 WP_103266754.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35421.77 Da        Isoelectric Point: 10.2750

>NTDB_id=832479 QMO72_RS10645 WP_069823589.1 2183289..2184257(-) (ceuB) [Staphylococcus casei strain DSM 15096]
MKFLLNGIVLFIILLLLTILSLFIGVSKVSVTDIFHLSKEQMNIIVSSRIPRTVSILISGSTLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILISLIFFPEENIMIKLAFAVTLSIAGTFLFVKLIQLIRFKDVIFVPLLGIMLGGIISSFATFMALR
TNTVQSVGNWLNGNFAIITSGRYEILYLSIPLLVLTYIFANHFTIAGMGKDFSNNLGVNYEKIINIGLFITATITALVVV
TVGTLPFLGLIVPNIVSIFRGDHLKNALPHTAMLGAIFVMFSDIIGRIVVYPYEINIGLTIGVFGTIIFIILLMKGRHHY
AN

Nucleotide


Download         Length: 969 bp        

>NTDB_id=832479 QMO72_RS10645 WP_069823589.1 2183289..2184257(-) (ceuB) [Staphylococcus casei strain DSM 15096]
ATGAAATTTTTACTTAATGGTATTGTTTTATTTATTATTCTACTATTATTAACTATCCTTTCTTTATTTATAGGTGTAAG
TAAAGTTTCTGTTACAGATATTTTTCATTTATCTAAAGAGCAGATGAATATTATTGTTTCTAGTAGAATCCCTAGAACAG
TAAGTATATTAATATCTGGGAGCACCTTGGCACTTGCAGGATTAATCATGCAACAGATGATGCAAAATAAGTTTGTAAGT
CCAACTACAGCAGGAACTATGGAATGGGCTAAGTTAGGTATATTAATCTCTCTTATATTCTTTCCAGAAGAAAACATCAT
GATTAAGTTAGCATTTGCAGTTACTTTGAGCATTGCTGGAACATTTTTATTTGTAAAACTGATTCAGCTTATTCGTTTCA
AAGATGTCATTTTTGTACCGTTATTAGGCATCATGCTAGGTGGTATTATCTCTAGTTTTGCTACTTTTATGGCATTAAGA
ACAAATACAGTTCAAAGTGTTGGCAATTGGTTGAATGGGAACTTTGCAATTATCACGAGTGGAAGATATGAAATATTATA
TTTAAGTATTCCATTATTAGTACTTACATACATATTCGCAAATCATTTTACGATAGCAGGGATGGGAAAAGATTTTAGTA
ACAATTTAGGTGTGAATTATGAAAAAATAATAAACATCGGATTATTTATTACAGCTACGATTACTGCATTGGTAGTGGTG
ACAGTGGGGACATTACCATTTTTAGGATTAATTGTTCCTAATATTGTCTCTATTTTTAGAGGAGATCACTTGAAGAATGC
ATTGCCTCATACAGCGATGTTAGGAGCTATATTTGTTATGTTTTCAGATATTATAGGGAGAATTGTCGTTTATCCTTATG
AAATTAATATCGGATTAACAATTGGCGTCTTTGGCACTATTATCTTCATAATCTTGCTGATGAAAGGACGACATCATTAT
GCAAATTAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

48.438

99.379

0.481