Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   QMO72_RS06495 Genome accession   NZ_CP125718
Coordinates   1337019..1339406 (+) Length   795 a.a.
NCBI ID   WP_103267833.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1332019..1344406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS06475 (QMO72_06475) sal 1332263..1333894 (+) 1632 WP_103267837.1 Sal family ABC-F type ribosomal protection protein -
  QMO72_RS06480 (QMO72_06480) - 1333956..1335098 (+) 1143 WP_103267836.1 cysteine desulfurase family protein -
  QMO72_RS06485 (QMO72_06485) mnmA 1335099..1336211 (+) 1113 WP_103267835.1 tRNA 2-thiouridine(34) synthase MnmA -
  QMO72_RS06490 (QMO72_06490) - 1336350..1337015 (+) 666 WP_103267834.1 tetratricopeptide repeat protein -
  QMO72_RS06495 (QMO72_06495) recD2 1337019..1339406 (+) 2388 WP_103267833.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QMO72_RS06500 (QMO72_06500) alaS 1339760..1342390 (+) 2631 WP_103267832.1 alanine--tRNA ligase -
  QMO72_RS06505 (QMO72_06505) - 1342459..1342719 (+) 261 WP_046836609.1 IreB family regulatory phosphoprotein -
  QMO72_RS06510 (QMO72_06510) ruvX 1342723..1343151 (+) 429 WP_046836608.1 Holliday junction resolvase RuvX -
  QMO72_RS06515 (QMO72_06515) - 1343168..1343494 (+) 327 WP_069823904.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 795 a.a.        Molecular weight: 89483.10 Da        Isoelectric Point: 4.5254

>NTDB_id=832467 QMO72_RS06495 WP_103267833.1 1337019..1339406(+) (recD2) [Staphylococcus casei strain DSM 15096]
MEDPTLFTSSMIKGTVDAILFQNKENFYTVLKVDMIESNESFDSMPTIVGFFPEITEGDVYTFKGQIVTHSKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNNPEILEKVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYMGDTLDIVESKPYQLVYDVKGIGFNKADTLARNVGIQFNDAERLKAGLLYVLEEACIKQG
HTYLPTNNVLEMTQDMLSQPPAEMIDTQQLETVLQDLVSDTKLIQQENEIAIPSLYYSELKSVQNLYRNFSYTNKLKEIE
QSDLLLEIGDIEERNKVSYADSQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYQNDDYPVVLA
APTGRASKRLADATGLEAMTIHRLIGWNQDTSPEDILDNEISAKLIIIDEMSMVDTWLFHQFMSAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGESIDITQRFHDRNFINCSTDQIPSVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNTVLQHILNPKEKDTREIEFGDVFFRKGDKVLQLVNRPSDNIFNGDIGEIVGIFW
AKENALNKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCSLLKAYFNNEVISEEEDINQRIDSETVLTESTMFKIDPMINMGTISPYDFVED

Nucleotide


Download         Length: 2388 bp        

>NTDB_id=832467 QMO72_RS06495 WP_103267833.1 1337019..1339406(+) (recD2) [Staphylococcus casei strain DSM 15096]
ATGGAAGACCCTACATTATTCACGAGTTCTATGATTAAAGGCACTGTTGATGCAATTTTATTTCAAAATAAAGAGAACTT
TTATACAGTTTTAAAAGTAGATATGATTGAATCAAATGAATCATTCGATTCAATGCCTACAATTGTAGGGTTTTTTCCAG
AAATAACTGAAGGCGATGTCTATACTTTTAAAGGTCAAATTGTTACCCATTCAAAATACGGCAAACAATTAAAGGCTGAA
ACGTTTGAAAAGGAATTACCACAAACGAAAGAAGCTATTATAAGTTATTTATCTAGTGATTTATTTAAAGGTATAGGAAA
AAAAACAGCACAAAGCATTGTAAATAAATTAGGCGAAAATGCGATAAATGATATCTTAAATAATCCAGAAATATTAGAAA
AAGTACCGGGGTTACCTAAGAAAAAACAAAAGCAAATTGCTGAGCAGATTGCGAGCAATCAAGAAACCGAACAAATCATT
ATACGTTTACATGATTTAGGATTTGGACCTAAACTTGCAATGGCTATTTATCAAGCTTATATGGGAGATACACTTGATAT
AGTTGAAAGTAAACCCTACCAACTTGTTTATGATGTGAAAGGTATTGGCTTTAACAAGGCAGATACTTTAGCTAGGAATG
TTGGTATCCAGTTTAATGATGCTGAGCGTCTTAAGGCAGGCTTACTATATGTATTAGAAGAAGCGTGTATTAAACAAGGT
CATACCTATTTACCAACGAATAATGTATTGGAAATGACTCAAGATATGTTATCGCAGCCACCAGCTGAGATGATTGACAC
GCAACAATTAGAAACAGTGTTACAAGATTTAGTGAGTGATACTAAGTTAATTCAACAAGAGAATGAAATTGCTATACCCA
GCCTATATTATTCAGAACTTAAAAGTGTGCAAAATTTATATCGTAATTTCAGCTATACTAACAAATTAAAAGAAATCGAA
CAATCAGATTTGTTACTTGAAATTGGCGATATTGAAGAAAGAAATAAAGTGTCATATGCTGACTCACAAAGAGAAGCGTT
ACAAACTGCAATCAATTCTAAGGTAATGTTGCTTACTGGTGGGCCAGGTACAGGAAAAACGACAGTGATAAAAGGTATTG
TCGAGTTATACGCTGAAATTCATGGTTTATCTTTGGATTATGATGATTATCAAAACGATGATTATCCAGTGGTTTTAGCA
GCACCAACCGGAAGAGCTTCAAAACGATTGGCTGATGCTACAGGCTTAGAAGCAATGACAATTCATAGATTAATTGGATG
GAATCAGGATACATCACCAGAAGATATTTTAGATAATGAAATTTCGGCCAAACTGATCATTATAGACGAAATGTCTATGG
TTGATACATGGTTGTTTCATCAATTTATGAGTGCTGTGCCGATAGATGCGCAAGTCATTCTAGTAGGTGATGAAGATCAA
TTACCTTCTGTTGGACCGGGACAAGTATTTAAAGATTTAATTGATTCTAAGGTCATACCTCGTGTGAATCTGACCGAAGT
CTATCGTCAACAAGATGGCTCGAGTATTATTGAATTGGCTCACAGAATGAAATTAGGTGAGTCCATAGATATTACACAGC
GATTCCATGATCGTAATTTTATTAATTGTAGTACAGATCAAATCCCATCTGTCGTAGAAAAAGTAGTATCAAGTGCAGTG
AATAAAGGCTATGACATGAGTGATATACAAGTATTGGCTCCTATGTACAAAGGTTCGGCCGGTATTAAAAAGTTGAATAC
TGTATTACAACATATCTTAAATCCTAAAGAAAAAGATACACGAGAAATAGAATTTGGTGATGTTTTCTTTAGAAAAGGTG
ATAAAGTGTTGCAACTGGTAAATAGACCGAGTGATAATATTTTTAATGGTGATATCGGCGAAATTGTTGGCATATTCTGG
GCAAAAGAAAATGCTTTGAATAAAGATGTACTTGTAGTTGATTTCGAGGGGAATGAAATTACATTCACACGTCAAGATTT
AATGGAATTGACACATGCTTATTGTACCTCAATCCATAAATCGCAAGGTTCTGAATTTCCAATTGTGATCATGCCGATGG
TAAAACAGTATTTTAGAATGTTACAAAAACCGATATTATATACCGGTCTTACACGAGCTAAGCAATCTTTAGTCTTTTTG
GGGGACCCGCAAGCGTTTGATATAGGATTGAAAACACATGGACAAGTGAGAATGACACAACTATGTTCACTCTTGAAAGC
TTACTTCAATAATGAAGTAATTTCAGAAGAGGAAGATATCAATCAACGTATTGATTCAGAAACAGTATTAACAGAATCTA
CAATGTTTAAAATTGACCCAATGATAAATATGGGAACTATTTCTCCATATGATTTCGTAGAAGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix domain (HHH_5)

(103-149)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)

AAA domain (AAA_30)

(339-545)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50

99.874

0.499