Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   QMO72_RS04445 Genome accession   NZ_CP125718
Coordinates   956909..957625 (-) Length   238 a.a.
NCBI ID   WP_103267504.1    Uniprot ID   -
Organism   Staphylococcus casei strain DSM 15096     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 951909..962625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMO72_RS04425 (QMO72_04425) - 952970..953197 (+) 228 WP_069824791.1 sulfurtransferase TusA family protein -
  QMO72_RS04430 (QMO72_04430) - 953344..954306 (+) 963 WP_103267507.1 LacI family DNA-binding transcriptional regulator -
  QMO72_RS04435 (QMO72_04435) - 954404..955888 (+) 1485 WP_103267506.1 sucrose-6-phosphate hydrolase -
  QMO72_RS04440 (QMO72_04440) - 955885..956850 (+) 966 WP_103267505.1 carbohydrate kinase -
  QMO72_RS04445 (QMO72_04445) agrA 956909..957625 (-) 717 WP_103267504.1 quorum-sensing response regulator AgrA Regulator
  QMO72_RS04450 (QMO72_04450) agrC 957638..958933 (-) 1296 WP_286093241.1 quorum-sensing sensor histidine kinase AgrC -
  QMO72_RS04455 (QMO72_04455) agrD 958959..959096 (-) 138 WP_103268067.1 cyclic lactone autoinducer peptide AgrD -
  QMO72_RS04460 (QMO72_04460) - 959093..959668 (-) 576 WP_103268068.1 accessory gene regulator AgrB -
  QMO72_RS04465 (QMO72_04465) - 960648..961433 (-) 786 WP_103268069.1 carbon-nitrogen family hydrolase -
  QMO72_RS04470 (QMO72_04470) - 961604..962233 (-) 630 WP_107553242.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27972.79 Da        Isoelectric Point: 5.4190

>NTDB_id=832458 QMO72_RS04445 WP_103267504.1 956909..957625(-) (agrA) [Staphylococcus casei strain DSM 15096]
MKIFICEDDARQRENMISIINNYIMIEEKPMQIEVATDDPYEILERSKNTSDIGCYFLDIQLKSDINGIKLASEIRKYDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLNTSESRLKLLSKESNVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDDRFFRCHNSFVINRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=832458 QMO72_RS04445 WP_103267504.1 956909..957625(-) (agrA) [Staphylococcus casei strain DSM 15096]
ATGAAAATATTCATATGTGAAGATGATGCAAGACAACGCGAAAATATGATATCAATCATCAACAACTACATCATGATTGA
AGAGAAACCCATGCAAATTGAAGTTGCAACTGATGATCCTTATGAAATACTAGAACGTTCAAAAAACACGAGTGACATTG
GATGTTACTTTTTAGATATTCAACTAAAATCTGATATTAATGGCATTAAACTTGCAAGTGAAATTCGTAAATATGATCCT
GTCGGTAATATTATTTTTGTTACAAGTCATAGTGAACTTACTTATCTCACTTTCGTGTATAAAGTTGCTGCTATGGACTT
CATCTTCAAAGATGACCCTGATGAATTAAAATCAAGAATTATTGATTGTCTTAATACCTCTGAATCTAGATTAAAACTAC
TTTCTAAAGAATCTAATGTGGAAACGATAGAATTAAAACGTGGCAGTAATTCTGTCTATGTTCAATATGATGATGTTATG
TTTTTCGAATCTTCTACTAAATCACATCGATTAATTGCTCATTTAGATAATCGTCAAATCGAATTTTACGGCAATCTTAA
AGAGCTGGATCAACTTGATGATAGATTCTTCCGATGTCATAATAGTTTTGTTATAAATCGACACAACATAGAATCTATAG
ATTCTAAATCACGTATTGTTTACTTTAAAAACAACGAACATTGCTATGCTTCAGTGAGAAACGTCAAGAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857