Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U0450_RS05070 Genome accession   NZ_CP139863
Coordinates   1011671..1012441 (-) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1006671..1017441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS05040 comA 1006805..1008958 (-) 2154 WP_050306106.1 peptide cleavage/export ABC transporter ComA Regulator
  U0450_RS05045 - 1009545..1009670 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  U0450_RS05050 blpU 1009673..1009903 (-) 231 Protein_1004 bacteriocin-like peptide BlpU -
  U0450_RS05055 - 1010106..1010406 (-) 301 Protein_1005 transposase family protein -
  U0450_RS05060 - 1010443..1010676 (-) 234 WP_000659556.1 acyl carrier protein -
  U0450_RS05065 plsX 1010682..1011674 (-) 993 WP_050311686.1 phosphate acyltransferase PlsX -
  U0450_RS05070 recO 1011671..1012441 (-) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  U0450_RS05075 - 1012438..1013607 (-) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  U0450_RS05080 - 1013756..1014766 (+) 1011 WP_050244738.1 YeiH family protein -
  U0450_RS05085 - 1014949..1015386 (-) 438 WP_000076485.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=832425 U0450_RS05070 WP_000616162.1 1011671..1012441(-) (recO) [Streptococcus pneumoniae strain 15P2112]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=832425 U0450_RS05070 WP_000616162.1 1011671..1012441(-) (recO) [Streptococcus pneumoniae strain 15P2112]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGATCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996