Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   R8624_RS00195 Genome accession   NZ_AP026930
Coordinates   37015..37785 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32015..42785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS00180 (PC1195_00290) - 34070..34507 (+) 438 WP_000076485.1 CoA-binding protein -
  R8624_RS00185 (PC1195_00300) - 34690..35700 (-) 1011 WP_050244738.1 YeiH family protein -
  R8624_RS00190 (PC1195_00310) - 35849..37018 (+) 1170 WP_000366345.1 pyridoxal phosphate-dependent aminotransferase -
  R8624_RS00195 (PC1195_00320) recO 37015..37785 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  R8624_RS00200 (PC1195_00330) plsX 37782..38774 (+) 993 WP_050311686.1 phosphate acyltransferase PlsX -
  R8624_RS00205 (PC1195_00340) - 38780..39013 (+) 234 WP_000659556.1 acyl carrier protein -
  R8624_RS00210 - 39050..39350 (+) 301 Protein_34 transposase family protein -
  R8624_RS00215 blpU 39553..39783 (+) 231 Protein_35 bacteriocin-like peptide BlpU -
  R8624_RS00220 (PC1195_00350) - 39786..39911 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  R8624_RS00225 (PC1195_00360) comA 40498..42651 (+) 2154 WP_000668304.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=83241 R8624_RS00195 WP_000616162.1 37015..37785(+) (recO) [Streptococcus pneumoniae strain PZ900701208]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=83241 R8624_RS00195 WP_000616162.1 37015..37785(+) (recO) [Streptococcus pneumoniae strain PZ900701208]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGTCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996