Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   U0450_RS02680 Genome accession   NZ_CP139863
Coordinates   539018..539284 (-) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 15P2112     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534018..544284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS02670 metF 535578..536444 (-) 867 WP_050204693.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  U0450_RS02675 metE 536508..538757 (-) 2250 WP_050204694.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  U0450_RS02680 HI0659 539018..539284 (-) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  U0450_RS02685 - 539368..539813 (-) 446 Protein_533 helix-turn-helix domain-containing protein -
  U0450_RS02690 - 539969..540970 (+) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  U0450_RS02695 pheT 541038..543443 (-) 2406 WP_050233402.1 phenylalanine--tRNA ligase subunit beta -
  U0450_RS02700 - 543520..544017 (-) 498 WP_000619945.1 N-acetyltransferase -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=832403 U0450_RS02680 WP_001820593.1 539018..539284(-) (HI0659) [Streptococcus pneumoniae strain 15P2112]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=832403 U0450_RS02680 WP_001820593.1 539018..539284(-) (HI0659) [Streptococcus pneumoniae strain 15P2112]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489