Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   U0449_RS10020 Genome accession   NZ_CP139862
Coordinates   1945383..1947050 (+) Length   555 a.a.
NCBI ID   WP_138027112.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1940383..1952050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS09985 - 1940566..1940868 (+) 303 WP_000985089.1 bacteriocin immunity protein -
  U0449_RS09990 udk 1940976..1941614 (+) 639 WP_001181378.1 uridine kinase -
  U0449_RS09995 xseA 1941742..1943082 (+) 1341 WP_000417464.1 exodeoxyribonuclease VII large subunit -
  U0449_RS10000 - 1943060..1943272 (+) 213 WP_000043230.1 exodeoxyribonuclease VII small subunit -
  U0449_RS10005 - 1943269..1944144 (+) 876 WP_000743815.1 polyprenyl synthetase family protein -
  U0449_RS10010 - 1944137..1944952 (+) 816 WP_001041079.1 TlyA family RNA methyltransferase -
  U0449_RS10015 - 1944945..1945376 (+) 432 WP_001034412.1 arginine repressor -
  U0449_RS10020 recN 1945383..1947050 (+) 1668 WP_138027112.1 DNA repair protein RecN Machinery gene
  U0449_RS10025 - 1947052..1947780 (+) 729 WP_000133332.1 metallophosphoesterase family protein -
  U0449_RS10030 lepA 1947859..1949682 (+) 1824 WP_001047222.1 translation elongation factor 4 -
  U0449_RS10035 - 1949763..1950050 (-) 288 WP_050218904.1 hypothetical protein -
  U0449_RS10040 - 1950230..1950706 (+) 477 WP_000242208.1 PTS sugar transporter subunit IIA -
  U0449_RS10045 - 1950744..1951046 (+) 303 WP_000590566.1 PTS sugar transporter subunit IIB -
  U0449_RS10050 - 1951054..1951858 (+) 805 WP_322397731.1 IS5 family transposase -

Sequence

Protein


Download         Length: 555 a.a.        Molecular weight: 62774.19 Da        Isoelectric Point: 4.6517

>NTDB_id=832377 U0449_RS10020 WP_138027112.1 1945383..1947050(+) (recN) [Streptococcus pneumoniae strain 05H0020-2]
MLLEISIKNFAIIEAISLNFEKGMTVLTGETGAGKSIIIDAMNMILGARATTDVIRHGAPKAEIEGLFSVENSRLLQEIF
DEQGLELGDEIIIRREILQNGRSISRVNGQMVNLSVLRAIGQHLVDIHGQHDHEELMRPQLHIQMLDEFGDAAFWDLKET
YQTSFDAYRKMRKQVLEVKKNQQEHKARIEMLEFQMAEIEAANLQAGEDLALNQERDKLLNHKNIADTLTNAYSMLDNED
FSSLANVRSAMNDMESVEEYDPEYREISSSLSETYYVLEDISKRLEAIIEDLDFDGNRLMQVENRLDLLHTITRKYGGTV
DDVLLYFAKITEEYNLLTGNNLSSEDMEAELKKLEVNLVNLAGQLASARHNLAQQLEAEIKQELQDLYMEKAQFQVRFSK
GKFSREGNEMVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
QHGQVLAISHLPQVIAIADYQFFIEKISNDHSTVSTVRLLTVEERVEEVAKMLAGDDVTEAALTQARELLRNREK

Nucleotide


Download         Length: 1668 bp        

>NTDB_id=832377 U0449_RS10020 WP_138027112.1 1945383..1947050(+) (recN) [Streptococcus pneumoniae strain 05H0020-2]
ATGTTACTTGAAATTTCGATAAAAAACTTTGCCATTATTGAGGCTATTTCCCTCAATTTTGAAAAGGGGATGACTGTCCT
GACTGGTGAAACGGGTGCAGGGAAGTCGATTATCATTGATGCCATGAATATGATATTGGGAGCTCGTGCGACGACAGATG
TTATTCGTCATGGTGCACCAAAGGCAGAGATTGAGGGGCTTTTCTCAGTTGAGAATAGTCGCCTTTTACAGGAAATTTTT
GATGAGCAAGGTTTAGAATTAGGTGATGAAATTATCATCCGTCGGGAAATCTTGCAAAATGGTCGTAGTATCAGCCGTGT
AAATGGTCAGATGGTTAATCTGTCTGTTTTGCGAGCTATTGGGCAACATCTTGTAGATATTCATGGTCAGCATGACCATG
AGGAGTTAATGCGTCCCCAACTGCATATCCAGATGTTGGATGAATTTGGTGATGCCGCTTTTTGGGACTTGAAAGAAACC
TATCAAACGAGTTTTGATGCCTATCGGAAAATGCGCAAGCAGGTTCTGGAAGTCAAGAAAAACCAACAGGAACACAAGGC
ACGTATCGAAATGTTGGAATTTCAAATGGCAGAGATTGAGGCAGCAAACTTGCAGGCTGGAGAAGACTTGGCTCTCAATC
AAGAGCGAGATAAACTCCTCAACCACAAAAATATTGCGGATACACTGACCAATGCCTACAGTATGTTGGACAATGAAGAT
TTTTCAAGTCTGGCCAATGTTCGTTCAGCTATGAATGACATGGAAAGTGTCGAAGAGTATGATCCTGAATACCGTGAAAT
TTCAAGCTCTCTGTCTGAGACCTACTATGTTTTAGAAGACATTAGCAAACGTTTGGAAGCTATCATTGAGGACCTTGATT
TTGATGGCAATCGCCTGATGCAGGTTGAGAATCGTTTGGACCTCCTTCATACTATTACTCGTAAGTATGGTGGGACTGTT
GATGATGTTTTGCTTTATTTTGCCAAGATTACGGAAGAATACAATCTCTTGACAGGCAATAATCTTTCGTCTGAGGACAT
GGAAGCAGAGCTTAAGAAGTTGGAAGTCAATCTTGTCAATTTGGCAGGTCAACTTGCTTCTGCTCGTCATAATTTGGCTC
AGCAACTCGAAGCTGAGATTAAACAAGAACTGCAAGATCTTTATATGGAAAAAGCCCAGTTTCAGGTTCGTTTTAGTAAG
GGAAAATTCAGTCGTGAGGGAAATGAAATGGTTGAGTTTTATATTTCAACCAACCCTGGAGAAGACTTTAAACCCTTGGT
TAAGGTTGCTTCTGGAGGGGAATTATCTCGTCTCATGTTAGCCATTAAGTCTGCCTTTTCACGTAAAGAAGGCAAGACTA
GCATTGTCTTTGATGAGGTGGATACGGGAGTTTCAGGTCGTGTTGCTCAAGCTATTGCTCAGAAAATTCATAAAATTGGT
CAGCATGGTCAGGTTTTGGCTATCTCCCATTTGCCACAAGTAATTGCGATTGCAGATTATCAATTCTTTATTGAGAAGAT
TAGTAATGACCATTCAACGGTTTCGACTGTTCGTCTCTTGACGGTCGAAGAGCGAGTGGAGGAAGTTGCCAAGATGTTGG
CAGGTGATGATGTGACAGAAGCAGCCCTGACGCAAGCCAGAGAATTGTTGAGAAACAGGGAGAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.958

100

0.44