Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   QLH32_RS09495 Genome accession   NZ_CP125669
Coordinates   2001770..2002096 (-) Length   108 a.a.
NCBI ID   WP_283266043.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996770..2007096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS09475 (QLH32_09475) - 1997027..1997644 (-) 618 WP_283266039.1 FHA domain-containing protein -
  QLH32_RS09480 (QLH32_09480) gspD 1997709..1999967 (-) 2259 WP_283266040.1 type II secretion system secretin GspD -
  QLH32_RS09485 (QLH32_09485) - 2000008..2000847 (-) 840 WP_283266041.1 type II secretion system protein N -
  QLH32_RS09490 (QLH32_09490) gspN 2000847..2001590 (-) 744 WP_283266042.1 type II secretion system protein N -
  QLH32_RS09495 (QLH32_09495) hns 2001770..2002096 (-) 327 WP_283266043.1 H-NS histone family protein Regulator
  QLH32_RS09500 (QLH32_09500) - 2002484..2002921 (-) 438 WP_283266044.1 thioesterase family protein -
  QLH32_RS09505 (QLH32_09505) - 2002930..2004123 (-) 1194 WP_283269312.1 heme biosynthesis protein HemY -
  QLH32_RS09510 (QLH32_09510) - 2004130..2004960 (-) 831 WP_283266045.1 hypothetical protein -
  QLH32_RS09515 (QLH32_09515) - 2004957..2005733 (-) 777 WP_283266046.1 uroporphyrinogen-III synthase -
  QLH32_RS09520 (QLH32_09520) hemC 2005733..2006650 (-) 918 WP_283266047.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12343.04 Da        Isoelectric Point: 4.8536

>NTDB_id=832339 QLH32_RS09495 WP_283266043.1 2001770..2002096(-) (hns) [Acinetobacter sp. KCTC 92772]
MKPDISDLSVEDLKRLQVEAEALIASKKDQAIEDAYDQILAIAESVGFSIEELLELGEQKRKKTTRKAVEPRYRNKNNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=832339 QLH32_RS09495 WP_283266043.1 2001770..2002096(-) (hns) [Acinetobacter sp. KCTC 92772]
ATGAAACCCGATATTAGTGATTTATCTGTTGAAGACCTAAAACGTTTGCAGGTGGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGACCAGGCCATTGAAGATGCCTATGACCAGATTCTTGCGATTGCTGAAAGTGTTGGATTCAGTATTGAGGAACTAT
TGGAGCTTGGTGAGCAAAAACGTAAAAAAACAACGCGTAAAGCAGTAGAGCCGCGTTACCGTAATAAAAATAATGCTGAA
GAAACCTGGACAGGTCGTGGTAAACAACCACGCTGGTTGGTTGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

87.963

100

0.88