Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   QLH32_RS08940 Genome accession   NZ_CP125669
Coordinates   1868880..1871105 (+) Length   741 a.a.
NCBI ID   WP_283269228.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1863880..1876105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS08910 (QLH32_08910) lnt 1863893..1865452 (+) 1560 WP_283269222.1 apolipoprotein N-acyltransferase -
  QLH32_RS08915 (QLH32_08915) - 1865454..1865792 (-) 339 WP_267981218.1 tRNA-binding protein -
  QLH32_RS08920 (QLH32_08920) - 1866035..1866298 (+) 264 WP_283269223.1 DUF2798 domain-containing protein -
  QLH32_RS08925 (QLH32_08925) - 1866362..1866706 (-) 345 WP_279959780.1 hypothetical protein -
  QLH32_RS08930 (QLH32_08930) gspG 1866971..1867504 (-) 534 WP_283269224.1 type II secretion system major pseudopilin GspG -
  QLH32_RS08935 (QLH32_08935) gspF 1867513..1868718 (-) 1206 WP_283269226.1 type II secretion system inner membrane protein GspF -
  QLH32_RS08940 (QLH32_08940) priA 1868880..1871105 (+) 2226 WP_283269228.1 primosomal protein N' Machinery gene
  QLH32_RS08945 (QLH32_08945) - 1871143..1872960 (+) 1818 WP_283269229.1 cation:proton antiporter -
  QLH32_RS08950 (QLH32_08950) - 1873080..1873955 (+) 876 WP_283269231.1 Hsp33 family molecular chaperone HslO -
  QLH32_RS08955 (QLH32_08955) - 1874079..1874321 (+) 243 WP_283269232.1 hypothetical protein -
  QLH32_RS08960 (QLH32_08960) - 1874318..1874737 (+) 420 WP_283269233.1 type II toxin-antitoxin system VapC family toxin -
  QLH32_RS08965 (QLH32_08965) - 1874915..1875880 (+) 966 WP_283269234.1 DnaJ C-terminal domain-containing protein -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 84217.91 Da        Isoelectric Point: 8.5153

>NTDB_id=832335 QLH32_RS08940 WP_283269228.1 1868880..1871105(+) (priA) [Acinetobacter sp. KCTC 92772]
MPNQDSSAIVYRIRVAIPVYIYDTFDYTVSAEQYAQAQVGARVAISFGRQNLVGIITEKVDPNEAFTGQFKLKAITELLD
QEAILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHQWKIVPHDDPDGLLKRSQKQYDAYQILKLHPHG
TTENILNLSGVETTTLKALEKKGLVQCQLEPHDFTPMPVQLAQMPLTANPDQKQAIQQISKSLHHYQAFLLDGLTGSGKT
EVYLQVMHEVLKQGKQMLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIVIGTRSAIYTPL
PRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQQCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVASLPKMHV
IDLKVAKKQHGISQTLIDQIKQTLERKEQVLIFLNRRGYAPVLICESCGWQANCPHCDAHFTVHSQPYHYLHCHHCGTIQ
RLPEHCPECQQQTLKSIGAGTAKVEEHLNELFPHHEVIRVDRDSTSRVGSWQKIYDRIQQNKPTILLGTQMLAKGHHFPH
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQSLRPDHPMLTTLIEHDYRTVAKQMLAERKIALL
PPYRYAVLVRVESRDRAYSQQFLTEIAQQLRTMATDSVDIWGPIPAPMERKAGRYRAHMVILSADRAKLHFYLRQWWQQV
VHLPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=832335 QLH32_RS08940 WP_283269228.1 1868880..1871105(+) (priA) [Acinetobacter sp. KCTC 92772]
ATGCCGAACCAAGATTCCAGCGCCATTGTTTACCGTATTCGGGTTGCCATTCCTGTCTATATTTATGACACGTTTGACTA
TACGGTCAGTGCCGAGCAATATGCGCAGGCACAAGTTGGCGCACGCGTTGCGATTTCGTTTGGACGGCAGAACCTGGTTG
GGATCATCACTGAAAAGGTTGATCCAAACGAAGCATTTACAGGTCAATTTAAGCTTAAAGCCATTACCGAACTGCTCGAT
CAGGAAGCAATTCTAGACCAACAAGTTTTAACTTTATTGACATGGTCAGCACAGTATTACCAATTTCCAATTGGCGAAGT
CATGCAAAGCGCCTTACCCACCCTACTCAGACAAGGCCGCGCACTGGACATCCTGTTTCACCAATGGAAAATCGTTCCCC
ATGATGATCCCGATGGCTTATTGAAACGCTCGCAAAAACAATATGATGCCTACCAGATTCTCAAACTACATCCGCACGGA
ACCACAGAGAATATTTTAAACCTGAGTGGTGTGGAAACCACCACACTTAAGGCGCTGGAAAAAAAGGGGCTGGTGCAATG
TCAGCTTGAACCGCATGATTTCACCCCAATGCCTGTACAGTTGGCACAAATGCCACTCACAGCCAATCCAGACCAAAAGC
AAGCCATTCAACAGATTTCAAAATCGCTGCATCACTATCAGGCTTTTTTACTGGATGGCTTAACAGGCAGCGGTAAAACC
GAAGTCTATCTACAGGTCATGCATGAGGTGTTAAAACAGGGCAAACAGATGCTGGTGCTGGTGCCTGAAATTGGCCTGAC
TCCGCAAACCGTTGCCCGTTTTAAGTCTCGCTTTCACTGTGATGTGGCCTTGCTGCATTCAGGCCTGAATGATTCAAAAC
GCCTACAGGCCTGGCAGCATGCCCAGACGGGTAAAGCTTCAATTGTGATTGGCACACGCTCAGCAATTTATACGCCCTTA
CCCCGTCTTGGGCTGATTATTCTGGATGAGGAACATGATCTTTCCTATAAGCAGCAAGAGGGTTTTCGCTACCATGCCCG
CGATGTGGCACTCTATCGGGGACATCTCCAACAATGTCCCGTAATTTTAGGGTCAGCCACACCAAGTATTGATAGCTACC
ACTTGGTCGAATCAGGTAAATTGCATCTACTTGAATTGAACCAACGTGCTGGCGTTGCGAGCTTGCCCAAAATGCATGTG
ATTGACCTAAAGGTGGCAAAAAAACAGCATGGCATCAGTCAAACCTTGATTGACCAGATCAAGCAGACACTGGAACGCAA
GGAACAGGTGCTCATCTTTCTCAACCGCCGTGGCTATGCGCCTGTGCTGATTTGTGAAAGCTGTGGCTGGCAGGCCAATT
GCCCACATTGCGATGCCCACTTTACTGTGCATTCACAACCCTATCATTATTTGCATTGTCATCATTGTGGCACCATTCAG
CGTTTGCCTGAGCACTGCCCTGAATGCCAGCAGCAAACCCTCAAGAGCATCGGTGCAGGCACAGCAAAAGTGGAAGAACA
CCTGAATGAGCTGTTTCCCCATCATGAAGTGATTCGGGTGGATCGTGACAGCACCAGTCGGGTGGGGAGCTGGCAGAAGA
TTTATGACCGTATTCAGCAAAACAAACCAACGATTTTGCTGGGTACACAAATGCTGGCAAAAGGGCATCATTTCCCCCAT
GTCACTTTGGTTGCCATTCTGGATATTGATGCAGGATTACTGAGTGTCGATATCCGTGCGCCAGAACGTACCGCCCAGTT
GATTGTGCAGGTTGCAGGTCGTGCGGGCCGTGGCGAACACAAGGGCCATGTCTATTTGCAAAGCCTACGCCCTGACCATC
CCATGCTGACCACACTGATTGAACATGATTATCGAACCGTTGCAAAGCAAATGCTGGCTGAACGCAAAATAGCGTTATTG
CCACCCTATCGTTATGCTGTGCTGGTTCGGGTTGAATCCAGAGATAGGGCCTATAGCCAACAGTTTTTAACTGAGATTGC
ACAACAGTTAAGGACAATGGCAACAGACAGTGTTGATATTTGGGGACCTATTCCTGCACCGATGGAGCGTAAAGCAGGTC
GTTATCGGGCGCATATGGTGATTTTGTCTGCTGATCGGGCAAAACTGCATTTTTATTTACGCCAATGGTGGCAACAAGTG
GTACATTTACCTCGTCAGCATCAACTGAGACTGTCGATTGATGTAGACCCACAGGAGTTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-737)

3DNA-binding domain (3BD) (PriA_3primeBD)

(14-113)

DEAD/DEAH box helicase (DEAD)

(210-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.973

99.865

0.829