Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   QLH32_RS08320 Genome accession   NZ_CP125669
Coordinates   1746719..1747603 (-) Length   294 a.a.
NCBI ID   WP_283269096.1    Uniprot ID   -
Organism   Acinetobacter sp. KCTC 92772     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1741719..1752603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLH32_RS08300 (QLH32_08300) - 1742242..1743318 (+) 1077 WP_279961339.1 PhoH family protein -
  QLH32_RS08305 (QLH32_08305) ybeY 1743390..1743875 (+) 486 WP_283269091.1 rRNA maturation RNase YbeY -
  QLH32_RS08310 (QLH32_08310) - 1743887..1744186 (+) 300 WP_283269093.1 antibiotic biosynthesis monooxygenase -
  QLH32_RS08315 (QLH32_08315) - 1744258..1746423 (-) 2166 WP_283269094.1 TonB-dependent siderophore receptor -
  QLH32_RS08320 (QLH32_08320) tonB2 1746719..1747603 (-) 885 WP_283269096.1 TonB family protein Machinery gene
  QLH32_RS08325 (QLH32_08325) - 1747846..1748526 (+) 681 WP_283269097.1 hypothetical protein -
  QLH32_RS08330 (QLH32_08330) - 1748722..1749438 (+) 717 WP_283269098.1 DUF3108 domain-containing protein -
  QLH32_RS08335 (QLH32_08335) - 1749583..1750158 (+) 576 WP_004674619.1 xanthine phosphoribosyltransferase -
  QLH32_RS08340 (QLH32_08340) thyA 1750339..1751181 (+) 843 WP_267981111.1 thymidylate synthase -
  QLH32_RS08345 (QLH32_08345) - 1751205..1751714 (+) 510 WP_283269099.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33339.01 Da        Isoelectric Point: 7.4647

>NTDB_id=832334 QLH32_RS08320 WP_283269096.1 1746719..1747603(-) (tonB2) [Acinetobacter sp. KCTC 92772]
MWKKINFRSELSPYWWQDPVFIAAVALAMLLHGVVLTIQFAMPSPTDTSTKEIAVTVHPSKEQVKDADFLAQADQKGSGE
FREAHLMSSDMPSPMQADATTGESELESLEKVQQKRELKFEEKVLMTVLSWQKQAEQSERKKALDELQSQFQAKAAMVAS
LEAQYLKRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQRLSGEVRLMVILNAQGGIRAIRL
IEGSGHAILDEAAKASVRRGAPFGAFDANMKDISELRIVRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=832334 QLH32_RS08320 WP_283269096.1 1746719..1747603(-) (tonB2) [Acinetobacter sp. KCTC 92772]
ATGTGGAAGAAAATAAATTTTCGTTCTGAACTGTCTCCTTATTGGTGGCAAGATCCAGTTTTTATTGCAGCAGTGGCTTT
GGCGATGCTGTTGCATGGTGTTGTCTTGACCATTCAGTTTGCGATGCCATCACCTACTGATACCTCAACCAAGGAAATTG
CGGTCACGGTTCATCCCAGCAAGGAGCAGGTAAAAGATGCCGACTTTTTGGCACAGGCTGACCAAAAGGGTTCAGGTGAA
TTCCGCGAGGCACACCTGATGTCGAGTGACATGCCCTCACCAATGCAGGCGGATGCAACGACAGGTGAGTCAGAACTGGA
AAGCCTGGAAAAGGTTCAACAAAAACGGGAATTAAAATTCGAAGAAAAAGTCTTGATGACCGTACTTAGCTGGCAGAAAC
AGGCTGAACAGAGTGAGCGGAAAAAGGCGCTGGATGAATTGCAAAGCCAGTTTCAGGCGAAAGCTGCAATGGTGGCAAGC
CTTGAGGCCCAGTACCTGAAACGCCAGCAAAACTTTAGCCGCAAACAGCGTATTAAAACAGTTGATGGCATACAGGCAAA
GCAGGATGCTTCGGCTGCCTATCTGGATAAGTTCCGTCAAAAAGTTGAGTTGTATGGCAACCGTTACTATCCAGATGAAG
CAAAACAACAGCGCCTGTCGGGTGAAGTGCGTCTAATGGTCATTCTGAATGCGCAGGGGGGTATCCGTGCCATTCGCCTC
ATTGAAGGTTCAGGACATGCAATTCTGGATGAGGCAGCAAAAGCCTCTGTACGCCGTGGTGCACCATTTGGAGCTTTTGA
TGCCAATATGAAAGATATTTCTGAGTTGCGAATTGTGCGTACCTGGCGTTTTGACCCTGTCGATGCTGAATTTGAGGTGC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

77.891

100

0.779