Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   U0449_RS04990 Genome accession   NZ_CP139862
Coordinates   988551..989321 (-) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 05H0020-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 983551..994321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0449_RS04960 comA 983685..985838 (-) 2154 WP_000668303.1 peptide cleavage/export ABC transporter ComA Regulator
  U0449_RS04965 - 986425..986550 (-) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  U0449_RS04970 blpU 986553..986783 (-) 231 Protein_990 bacteriocin-like peptide BlpU -
  U0449_RS04975 - 986986..987286 (-) 301 Protein_991 transposase family protein -
  U0449_RS04980 - 987323..987556 (-) 234 WP_000659556.1 acyl carrier protein -
  U0449_RS04985 plsX 987562..988554 (-) 993 WP_000717452.1 phosphate acyltransferase PlsX -
  U0449_RS04990 recO 988551..989321 (-) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  U0449_RS04995 - 989318..990487 (-) 1170 WP_000366347.1 pyridoxal phosphate-dependent aminotransferase -
  U0449_RS05000 - 990636..991646 (+) 1011 WP_000009169.1 YeiH family protein -
  U0449_RS05005 - 991829..992266 (-) 438 WP_000076485.1 CoA-binding protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=832307 U0449_RS04990 WP_000616162.1 988551..989321(-) (recO) [Streptococcus pneumoniae strain 05H0020-2]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=832307 U0449_RS04990 WP_000616162.1 988551..989321(-) (recO) [Streptococcus pneumoniae strain 05H0020-2]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGATAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGCCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAACTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996