Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   QMA40_RS11950 Genome accession   NZ_CP125661
Coordinates   2289329..2289610 (+) Length   93 a.a.
NCBI ID   WP_000843025.1    Uniprot ID   A0AAN4KMT0
Organism   Bacillus thuringiensis strain BV5     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2284329..2294610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA40_RS11910 (QMA40_11850) - 2284491..2285270 (+) 780 WP_033697005.1 hypothetical protein -
  QMA40_RS11915 (QMA40_11855) - 2285510..2286064 (-) 555 WP_030025164.1 hypothetical protein -
  QMA40_RS11920 (QMA40_11860) - 2286185..2286628 (+) 444 WP_030025166.1 hypothetical protein -
  QMA40_RS11925 (QMA40_11865) - 2286625..2287278 (+) 654 WP_030025168.1 hypothetical protein -
  QMA40_RS11930 (QMA40_11870) - 2287401..2287718 (+) 318 WP_030025171.1 hypothetical protein -
  QMA40_RS11935 (QMA40_11875) - 2287735..2288676 (+) 942 WP_410491629.1 hypothetical protein -
  QMA40_RS11940 (QMA40_11880) - 2288679..2288825 (+) 147 WP_000790088.1 BC1881 family protein -
  QMA40_RS11945 (QMA40_11885) - 2288952..2289332 (+) 381 WP_000659531.1 hypothetical protein -
  QMA40_RS11950 (QMA40_11890) abrB 2289329..2289610 (+) 282 WP_000843025.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  QMA40_RS11955 (QMA40_11895) - 2289612..2289809 (+) 198 WP_001294615.1 hypothetical protein -
  QMA40_RS11960 (QMA40_11900) - 2290000..2290278 (+) 279 WP_030025181.1 hypothetical protein -
  QMA40_RS11965 (QMA40_11905) - 2290299..2290826 (+) 528 WP_030025183.1 hypothetical protein -
  QMA40_RS11970 (QMA40_11910) - 2290823..2291005 (+) 183 WP_030025185.1 DUF6877 family protein -
  QMA40_RS11975 (QMA40_11915) - 2290995..2291321 (+) 327 WP_030025187.1 hypothetical protein -
  QMA40_RS11980 (QMA40_11920) - 2291581..2291970 (+) 390 WP_030025189.1 hypothetical protein -
  QMA40_RS11985 (QMA40_11925) - 2292370..2292930 (+) 561 WP_030025191.1 recombinase family protein -
  QMA40_RS11990 (QMA40_11930) - 2293128..2293556 (+) 429 WP_001086032.1 phBC6A51 family helix-turn-helix protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10244.87 Da        Isoelectric Point: 4.6282

>NTDB_id=832300 QMA40_RS11950 WP_000843025.1 2289329..2289610(+) (abrB) [Bacillus thuringiensis strain BV5]
MKSTGIIRNIDPLGRIVVPMELRRTLGIQVKDPMEIFVDGESIILQKYNPNNSCQITGEVSEENIELAGGKLVLSPEGVD
QVLAELEARLKGR

Nucleotide


Download         Length: 282 bp        

>NTDB_id=832300 QMA40_RS11950 WP_000843025.1 2289329..2289610(+) (abrB) [Bacillus thuringiensis strain BV5]
ATGAAATCAACAGGTATCATTCGTAACATTGATCCATTAGGACGTATTGTGGTTCCGATGGAATTACGCCGTACATTAGG
TATCCAGGTAAAGGATCCTATGGAGATTTTCGTAGATGGTGAATCTATTATTCTACAAAAATATAATCCTAATAACTCTT
GCCAAATTACAGGCGAGGTTTCAGAAGAAAATATTGAACTAGCTGGCGGTAAACTCGTGCTAAGTCCTGAAGGGGTTGAT
CAGGTATTAGCGGAACTCGAAGCACGTTTGAAGGGGCGGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(14-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

62.637

97.849

0.613