Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   QMA40_RS06455 Genome accession   NZ_CP125661
Coordinates   1238583..1238906 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis strain BV5     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233583..1243906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMA40_RS06430 (QMA40_06400) - 1233855..1235141 (+) 1287 WP_000247029.1 D-alanyl-D-alanine carboxypeptidase family protein -
  QMA40_RS06435 (QMA40_06405) sipW 1235332..1235901 (+) 570 WP_000767792.1 signal peptidase I SipW -
  QMA40_RS06440 (QMA40_06410) - 1235962..1236549 (+) 588 WP_000172854.1 CalY family protein -
  QMA40_RS06445 (QMA40_06415) - 1236684..1237526 (+) 843 WP_410491525.1 DUF4047 domain-containing protein -
  QMA40_RS06450 (QMA40_06420) calY 1237916..1238509 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  QMA40_RS06455 (QMA40_06425) sinR 1238583..1238906 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  QMA40_RS06460 (QMA40_06430) - 1238986..1239120 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  QMA40_RS06465 (QMA40_06435) inhA1 1239463..1241853 (+) 2391 WP_322371201.1 M6 family metalloprotease immune inhibitor InhA1 -
  QMA40_RS06470 (QMA40_06440) - 1242025..1243392 (+) 1368 WP_000028381.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=832295 QMA40_RS06455 WP_000578885.1 1238583..1238906(-) (sinR) [Bacillus thuringiensis strain BV5]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=832295 QMA40_RS06455 WP_000578885.1 1238583..1238906(-) (sinR) [Bacillus thuringiensis strain BV5]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692