Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   U0447_RS10205 Genome accession   NZ_CP139861
Coordinates   1975246..1978521 (-) Length   1091 a.a.
NCBI ID   WP_000772334.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1970246..1983521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS10195 - 1970289..1971467 (-) 1179 WP_322396426.1 hypothetical protein -
  U0447_RS10200 rexA 1971599..1975249 (-) 3651 WP_000767273.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  U0447_RS10205 rexB 1975246..1978521 (-) 3276 WP_000772334.1 ATP-dependent nuclease subunit B Machinery gene
  U0447_RS10210 - 1978721..1978876 (-) 156 Protein_1966 diacylglycerol kinase family lipid kinase -
  U0447_RS10215 - 1979047..1980002 (+) 956 Protein_1967 IS630 transposase-related protein -
  U0447_RS10220 - 1979902..1980348 (+) 447 WP_025169156.1 tyrosine-type recombinase/integrase -
  U0447_RS10225 eno 1980486..1981790 (-) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  U0447_RS10230 - 1981954..1982400 (+) 447 WP_000131076.1 YueI family protein -
  U0447_RS10235 - 1982397..1983506 (-) 1110 WP_050232726.1 glycerate kinase -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124683.52 Da        Isoelectric Point: 5.6640

>NTDB_id=832260 U0447_RS10205 WP_000772334.1 1975246..1978521(-) (rexB) [Streptococcus pneumoniae strain 16H2017-2]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPAKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMNFLDLENLTDEDKRADLLLIFEKVTAYLNQ
GQLAQGSQLSHLIEAIENDKVSSDFNQIALVIDGFTRFSAEEERVVDLLHGKGAEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFASRKQKAENLLQKWSVFLKEGAVTK
QLQDLTTTLEAVEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKISQNTSLLTDEERQNLNQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLFLSAPSLFNESE
SKESAYLQELIHFGFRRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGEMSDTEQDLTFVKVLSRVIGKKLDLQGLENP
AIPISPSSKTLAKDTLQALYPAKQEFYLSTSGLTEFYRNEYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPN
EDSFDQRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPCV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=832260 U0447_RS10205 WP_000772334.1 1975246..1978521(-) (rexB) [Streptococcus pneumoniae strain 16H2017-2]
ATGAAATTACTTTATACTGATATTCGAACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGCTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATCCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAATTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGGCGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGGCAGTTAGCCCAGGGAAGTCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTTAATCA
AATCGCCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
CTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCCGCTCAGGACTGTTCTCAAACTCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAGATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGATTAATCTTCTTAGAACTGACTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAACAATATATCCGCTATCTTGGTATTAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGCCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCCAGCCGAAAACAAAAGGCTGAAAACCTCCTACAAAAATGGAGTGTCTTTCTAAAAGAAGGAGCTGTGACCAAG
CAGTTACAAGATTTGACAACCACTTTGGAAGCTGTAGAACAGGAAAGACAAGCCGAAGTTTGGAAGGCTTTCTGCCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGGTTAGTCTGGAAGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAATACCGTACCATTCCAGCAACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCATTGACT
GCTGACTTTGTCTATGCTATTGGACTAACTCAGGACAATTTACCAAAAATTTCTCAAAACACCAGTCTTCTGACAGATGA
AGAAAGGCAAAATCTAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCCTTGGTCAATTCTGCTCGTAAGCAGTTGTTCTTGTCGGCTCCAAGCCTTTTTAACGAAAGTGAA
AGTAAGGAATCTGCCTATCTTCAAGAGTTGATCCATTTTGGATTTAGGCGGAGAGAGAAGAGGATGAATCACAAAGGACT
GTCTAAGGAGGATATGGGGTCCTATCACAGTCTTTTGTCTAGTCTGGTTGCCTATCACCAGCAGGGTGAGATGAGCGATA
CTGAGCAAGATTTGACTTTTGTCAAGGTTCTGTCGCGTGTCATAGGTAAAAAACTAGATCTGCAAGGTCTGGAAAATCCA
GCCATCCCAATCAGTCCAAGCAGCAAGACCTTAGCCAAGGACACCTTGCAAGCTCTCTATCCTGCCAAACAGGAGTTTTA
CCTGTCTACGTCGGGTTTGACAGAGTTTTATCGCAATGAATACAGTTATTTCCTACGCTACGTTTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCTGATGCCCGTAGTCACGGGAATTTCTTGCATCGTATCTTTGAACGCGCCTTGCAGTTGCCTAAT
GAAGATTCCTTTGACCAACGTCTAGAACAAGCTATTCAAGAAACCAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTTTTGCTTGATGTTGCACGGACAACTGGACATATTCTCCGCCATAATCCAG
TCATCGAAACCATTAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGACCGTTTGAAAGCTGATGGAGCGATAGGAGTAGTAGACTACAAGTCGAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGACTCAATTCCCAACTGCCAACCTATCTAGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCTATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCCAGCAAGTCAATGAAATACCAAGGCCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTACAATAAAAACAAGGCCAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCGGCTGAGAAGATTTTAGAAGGCCAGTTCGCTATCAATCCCTATACCGAAAATGGCAGAAGCATTGCTCCATGCGTC
CAGCAACATCAAGCCATCACAGGCTTTGAAGCCAATTACCATTTGGGTCAAGCCCGTTTCCTAGAAAAGTTGGACTTAGC
TGATGGCAAGCGTCTGGTTGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

98.533

100

0.985