Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   U0447_RS08155 Genome accession   NZ_CP139861
Coordinates   1564050..1564316 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 16H2017-2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1559050..1569316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0447_RS08135 - 1559261..1559770 (+) 510 WP_000619950.1 N-acetyltransferase -
  U0447_RS08140 pheT 1559847..1562252 (+) 2406 WP_050232733.1 phenylalanine--tRNA ligase subunit beta -
  U0447_RS08145 - 1562320..1563321 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  U0447_RS08150 - 1563477..1563965 (+) 489 Protein_1557 transposase -
  U0447_RS08155 HI0659 1564050..1564316 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  U0447_RS08160 metE 1564576..1566825 (+) 2250 WP_000108270.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  U0447_RS08165 metF 1566889..1567755 (+) 867 WP_044727883.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=832241 U0447_RS08155 WP_001811621.1 1564050..1564316(+) (HI0659) [Streptococcus pneumoniae strain 16H2017-2]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=832241 U0447_RS08155 WP_001811621.1 1564050..1564316(+) (HI0659) [Streptococcus pneumoniae strain 16H2017-2]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534