Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   U0448_RS07945 Genome accession   NZ_CP139860
Coordinates   1549509..1549775 (+) Length   88 a.a.
NCBI ID   WP_001820593.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1544509..1554775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS07925 - 1544764..1545273 (+) 510 WP_000619953.1 N-acetyltransferase -
  U0448_RS07930 pheT 1545350..1547755 (+) 2406 WP_219600148.1 phenylalanine--tRNA ligase subunit beta -
  U0448_RS07935 - 1547823..1548824 (-) 1002 WP_219600147.1 endonuclease/exonuclease/phosphatase family protein -
  U0448_RS07940 - 1548980..1549425 (+) 446 Protein_1519 helix-turn-helix domain-containing protein -
  U0448_RS07945 HI0659 1549509..1549775 (+) 267 WP_001820593.1 helix-turn-helix domain-containing protein Machinery gene
  U0448_RS07950 metE 1550036..1552285 (+) 2250 WP_050292440.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  U0448_RS07955 metF 1552349..1553215 (+) 867 WP_000089979.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9670.12 Da        Isoelectric Point: 4.3934

>NTDB_id=832124 U0448_RS07945 WP_001820593.1 1549509..1549775(+) (HI0659) [Streptococcus pneumoniae strain 21011]
MEGCPSELFSKEEILESDMRVAIMSELIEARHEQGINQRKLEELSGVSQPVIARMETGESSLQLDTVLKVLTSLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=832124 U0448_RS07945 WP_001820593.1 1549509..1549775(+) (HI0659) [Streptococcus pneumoniae strain 21011]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATTATGAGCGAGTT
GATTGAAGCTAGACATGAACAAGGAATCAATCAGAGAAAGCTAGAAGAACTCAGTGGAGTGAGTCAACCTGTCATAGCTA
GGATGGAAACAGGAGAGAGCAGTCTTCAGTTGGATACGGTCTTAAAAGTTCTAACCAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

55.844

87.5

0.489