Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   U0448_RS00035 Genome accession   NZ_CP139860
Coordinates   4890..8165 (+) Length   1091 a.a.
NCBI ID   WP_322397242.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..13165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS00005 - 1..1116 (+) 1116 WP_000706423.1 glycerate kinase -
  U0448_RS00010 - 1113..1559 (-) 447 WP_000131076.1 YueI family protein -
  U0448_RS00015 eno 1723..3027 (+) 1305 WP_000022813.1 surface-displayed alpha-enolase -
  U0448_RS00020 - 3165..3611 (-) 447 WP_001819398.1 tyrosine-type recombinase/integrase -
  U0448_RS00025 - 3511..4467 (-) 957 Protein_4 IS630 transposase-related protein -
  U0448_RS00030 - 4535..4690 (+) 156 Protein_5 diacylglycerol kinase family lipid kinase -
  U0448_RS00035 rexB 4890..8165 (+) 3276 WP_322397242.1 ATP-dependent nuclease subunit B Machinery gene
  U0448_RS00040 rexA 8162..11812 (+) 3651 WP_050258843.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  U0448_RS00045 - 11774..11941 (-) 168 WP_001828683.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124881.75 Da        Isoelectric Point: 5.5341

>NTDB_id=832028 U0448_RS00035 WP_322397242.1 4890..8165(+) (rexB) [Streptococcus pneumoniae strain 21011]
MKLLYTDIRTSLTEILTREAEELVAAGKRVFYIAPNSLSFEKERAVLECLSQQASFSITVTRFAQMARYLVLNDLPVKTT
LDDIGLGLAFYKCLAELDPKDLRVYGAIKQDPQLIQQLIELYHEMTKSQMSFLDLENLTDEDKRTDLLLIFEKVTAYLNQ
GQLAQVSQLFHLIEAIENDKVSSDFNQITLVIDGFTRFSAEEERVVDLLHGKGVEIVIGAYASKKAYTSPFSEGNLYQAS
VKFLHHLASKYQTPAQDCSQTHEKMDSFDKASRLLESSYDFSELALDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEAMAHHPLTQFVESILALKRYRFRQEDLINLLRTDLYTDL
SQSDIDAFEQYIRYLGINGLPAFQQTFTKSHHGKFNLERLNVLRLRILAPLETLFANRKQKAENLLQKWNVFLKEGVVTK
QLQDLTATMEAIEQERQAEVWKAFCHVLEQFATVFAGSQISLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQNINQATEEGVQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVHLGFSRKEKRMNHKRLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFVKVLARVMGKKLDQQGLENP
ALPTSPSSKQLTKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQEELRLRPDARSHGNFLHRIFERALQLPD
EDSFDNRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPVIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILEGQFAINPYTENGRSIAPCV
QQHQAITGFEANYHLGQARFLEKLDLADGKRLVGEKLKQAWLEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=832028 U0448_RS00035 WP_322397242.1 4890..8165(+) (rexB) [Streptococcus pneumoniae strain 21011]
ATGAAATTACTTTATACTGATATTCGAACTTCTTTGACAGAAATTCTAACAAGAGAGGCAGAAGAGCTAGTTGCAGCTGG
CAAGCGGGTCTTCTACATTGCCCCCAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTTCGATTACCGTCACGCGCTTTGCTCAAATGGCTCGTTATCTGGTCTTGAATGATTTACCAGTTAAAACTACT
CTTGATGATATCGGTCTTGGGTTGGCCTTTTACAAATGCCTTGCCGAACTCGATCCCAAGGACTTGCGTGTTTATGGCGC
TATTAAGCAGGATCCTCAATTGATTCAGCAGTTAATTGAGCTTTACCATGAGATGACCAAATCTCAGATGAGTTTTTTGG
ACTTGGAGAATTTAACAGATGAGGATAAGAGGACGGATTTACTCTTGATTTTTGAGAAAGTAACAGCCTATCTTAATCAA
GGTCAGTTAGCCCAGGTAAGTCAGTTGTTCCATTTGATTGAGGCTATTGAGAATGACAAGGTAAGTAGTGATTTTAATCA
AATCACCTTGGTCATTGACGGCTTTACTCGTTTTTCTGCTGAGGAAGAGCGGGTTGTGGACTTACTTCACGGCAAAGGTG
TTGAGATTGTTATCGGGGCTTATGCTAGTAAGAAAGCCTATACCAGTCCTTTTAGCGAGGGCAATCTCTACCAAGCCAGC
GTAAAATTTCTCCATCATCTGGCTTCTAAATACCAAACGCCTGCTCAGGACTGTTCTCAAACTCATGAGAAGATGGATAG
TTTTGACAAGGCCTCTCGTTTGTTGGAGTCTTCTTATGACTTTTCAGAACTCGCTTTGGATGTCGATGAGAAAGACCGTG
AAAATTTACAAATCTGGTCTTGTTTGACGCAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGCTACAAGCATTTTCGTATTCTCTTGGGGGATGTAGCTTCTTACCAGTTATCTCTCAAAACCAT
TTTTGACCAGTATCAAATTCCTTTTTATCTTGGTAGAAGCGAAGCCATGGCTCATCATCCCTTGACTCAGTTTGTCGAGT
CTATTTTAGCTTTAAAACGTTACCGTTTTCGTCAGGAGGATTTGATTAATCTTCTTAGAACTGATTTGTATACTGACCTC
AGTCAGTCTGATATTGATGCTTTTGAGCAATATATCCGCTATCTTGGTATCAATGGCTTGCCAGCCTTTCAGCAAACCTT
CACCAAATCCCACCATGGAAAATTTAATCTTGAGCGTTTGAATGTCCTCCGTCTGAGAATTTTAGCACCTCTTGAAACCC
TCTTTGCTAACCGAAAACAAAAGGCCGAAAATCTCTTGCAAAAGTGGAATGTCTTTCTAAAAGAAGGAGTGGTGACCAAG
CAGTTACAAGATTTGACAGCCACTATGGAAGCTATAGAACAGGAAAGACAAGCCGAGGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACTGTTTTTGCTGGTTCACAGATTAGTCTAGAGGACTTCCTAGCCTTGCTCCATTCTGGAATGA
GTTTGTCTCAGTATCGCACTATTCCAGCGACAGTGGACACCGTTCTGGTGCAGAGTTACGATTTGATTGCGCCTTTGACT
GCTGACTTTGTCTACGCCATTGGGCTAACTCAGGACAATTTACCAAAAATCGCGCAAAATACCAGTCTTTTGACAGATGA
AGAAAGACAAAACATAAACCAAGCGACCGAAGAAGGCGTTCAATTACTGATTGCCAGCAGTGAAAATCTCAAGAAAAATC
GCTACACTATGCTTTCTTTGGTCAATTCTGCCCGTAAGCAATTAGTTTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCCTATCTTCAAGAGTTGGTCCATTTGGGATTTAGTCGAAAAGAGAAGAGGATGAATCACAAAAGGCT
GTCTAAGGAAGATATGGGATCCTATCACAGTCTTTTGTCCAGTCTGGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
CTGAGCAAGATTTGACCTTTGTCAAGGTTCTGGCGCGTGTGATGGGTAAAAAACTAGACCAGCAAGGTTTGGAAAATCCT
GCCCTTCCAACCAGTCCAAGCAGTAAGCAGTTGACCAAAGATACCTTACAAGCTCTCTATCCTGCTGAACAGGAATTTTA
CCTATCTACGTCCGGTTTGACCGAGTTTTACAGAAACCAATACAGTTATTTCCTCCGCTACGTGTTAGGCTTGCAGGAGG
AATTACGTTTGCGTCCGGATGCTCGCAGTCATGGAAATTTCTTGCACCGCATTTTTGAACGTGCCTTGCAGTTGCCTGAT
GAAGATTCCTTTGACAACCGTCTAGAACAAGCTATTCAAGAAACTAGTCAAGAACGCGAATTTGAAGCTATTTATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAAGAAGTTTTGCTTGATGTTGCACGGACGACTGGTCACATTCTCCGCCATAATCCAG
TCATCGAAACCATTAAAGAAGAGGCAAATTTCGGTGGGAAAGAGCAAGCCTTTATTCAATTGGACAATGGACGCAGTGTC
TTTGTACGAGGTAAGGTGGACCGGATTGACCGTTTGAAAGCTGATGGAGCGATAGGAGTAGTAGACTACAAGTCGAGTCT
AACTCAGTTCCAGTTTCCTCATTTCTTTAATGGACTCAATTCCCAACTGCCAACCTATCTAGCTGCCCTAAAAAGAGAAG
GGGAGCAGAACTTTTTCGGTGCTATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCCAGCAAGTCAATGAAATACCAAGGCCTCTTTTTAGAAAAAGAAAGCAGTCATTTGGGCGAATT
TTACAATAAAAACAAGGCCAATCAGCTGACGGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCGGCTGAGAAGATTTTAGAAGGCCAGTTCGCTATCAATCCCTATACCGAAAATGGCAGAAGCATTGCTCCATGCGTC
CAGCAACATCAAGCCATCACAGGCTTTGAAGCCAATTACCATTTGGGTCAAGCCCGTTTCCTAGAAAAGTTGGACTTAGC
TGATGGCAAGCGTCTGGTTGGAGAAAAACTCAAGCAAGCTTGGCTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1031)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

96.242

100

0.962