Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QLX69_RS07780 Genome accession   NZ_CP125629
Coordinates   1529890..1531266 (-) Length   458 a.a.
NCBI ID   WP_283191259.1    Uniprot ID   -
Organism   Limosilactobacillus oris strain BSLO1801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1522033..1567574 1529890..1531266 within 0


Gene organization within MGE regions


Location: 1522033..1567574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLX69_RS07730 (QLX69_07730) - 1522033..1522956 (-) 924 WP_283191254.1 IS30 family transposase -
  QLX69_RS07735 (QLX69_07735) rplA 1523270..1523962 (-) 693 WP_191363202.1 50S ribosomal protein L1 -
  QLX69_RS07740 (QLX69_07740) rplK 1524057..1524482 (-) 426 WP_004564550.1 50S ribosomal protein L11 -
  QLX69_RS07745 (QLX69_07745) nusG 1524659..1525204 (-) 546 WP_003716015.1 transcription termination/antitermination protein NusG -
  QLX69_RS07750 (QLX69_07750) secE 1525314..1525490 (-) 177 WP_003716062.1 preprotein translocase subunit SecE -
  QLX69_RS07755 (QLX69_07755) rpmG 1525502..1525651 (-) 150 WP_191363201.1 50S ribosomal protein L33 -
  QLX69_RS07760 (QLX69_07760) rlmB 1525716..1526462 (-) 747 WP_283191255.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QLX69_RS07765 (QLX69_07765) - 1526452..1526865 (-) 414 WP_283191256.1 Mini-ribonuclease 3 -
  QLX69_RS07770 (QLX69_07770) cysS 1526877..1528292 (-) 1416 WP_283191257.1 cysteine--tRNA ligase -
  QLX69_RS07775 (QLX69_07775) - 1528730..1529863 (-) 1134 WP_283191258.1 PIN domain-containing protein -
  QLX69_RS07780 (QLX69_07780) radA 1529890..1531266 (-) 1377 WP_283191259.1 DNA repair protein RadA Machinery gene
  QLX69_RS07785 (QLX69_07785) - 1531280..1531816 (-) 537 WP_034537894.1 dUTP diphosphatase -
  QLX69_RS07790 (QLX69_07790) - 1531945..1532241 (+) 297 WP_194176421.1 GNAT family N-acetyltransferase -
  QLX69_RS07795 (QLX69_07795) rpiA 1532252..1532935 (+) 684 WP_194176422.1 ribose-5-phosphate isomerase RpiA -
  QLX69_RS07800 (QLX69_07800) - 1533031..1534371 (+) 1341 WP_283191260.1 C1 family peptidase -
  QLX69_RS07805 (QLX69_07805) - 1534716..1535378 (+) 663 WP_283191261.1 hypothetical protein -
  QLX69_RS07810 (QLX69_07810) - 1535469..1535648 (+) 180 WP_283191262.1 hypothetical protein -
  QLX69_RS07815 (QLX69_07815) - 1535669..1536166 (+) 498 WP_283191263.1 dihydrofolate reductase family protein -
  QLX69_RS07820 (QLX69_07820) - 1536248..1537114 (-) 867 WP_191363197.1 alpha/beta hydrolase -
  QLX69_RS07825 (QLX69_07825) - 1537116..1537805 (-) 690 WP_283191264.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  QLX69_RS07830 (QLX69_07830) - 1537866..1538816 (-) 951 WP_283192083.1 AEC family transporter -
  QLX69_RS07835 (QLX69_07835) - 1538996..1540756 (+) 1761 WP_283191265.1 cell division protein -
  QLX69_RS07840 (QLX69_07840) - 1540898..1541695 (+) 798 WP_283191266.1 IS30 family transposase -
  QLX69_RS07845 (QLX69_07845) - 1541778..1542485 (+) 708 WP_194177194.1 NUDIX domain-containing protein -
  QLX69_RS07850 (QLX69_07850) - 1542603..1544045 (+) 1443 Protein_1500 nicotinate phosphoribosyltransferase -
  QLX69_RS07855 (QLX69_07855) - 1544047..1544595 (+) 549 WP_003674828.1 isochorismatase family cysteine hydrolase -
  QLX69_RS07860 (QLX69_07860) - 1544617..1545447 (+) 831 WP_283191267.1 alpha/beta fold hydrolase -
  QLX69_RS07865 (QLX69_07865) - 1545969..1546604 (-) 636 WP_062813011.1 Crp/Fnr family transcriptional regulator -
  QLX69_RS07870 (QLX69_07870) - 1546624..1547169 (-) 546 WP_283191268.1 DNA-binding protein -
  QLX69_RS07875 (QLX69_07875) - 1547169..1547399 (-) 231 WP_062813009.1 heavy metal-associated domain-containing protein -
  QLX69_RS07880 (QLX69_07880) - 1547425..1549326 (-) 1902 WP_283191269.1 heavy metal translocating P-type ATPase -
  QLX69_RS07885 (QLX69_07885) - 1549523..1550391 (+) 869 Protein_1507 IS30 family transposase -
  QLX69_RS07890 (QLX69_07890) - 1550579..1551715 (+) 1137 WP_283190986.1 IS30 family transposase -
  QLX69_RS07895 (QLX69_07895) - 1551938..1553164 (+) 1227 WP_062813006.1 DUF389 domain-containing protein -
  QLX69_RS07900 (QLX69_07900) - 1553489..1554247 (+) 759 Protein_1510 zinc ribbon domain-containing protein -
  QLX69_RS07910 (QLX69_07910) - 1554270..1554680 (-) 411 WP_283191272.1 hypothetical protein -
  QLX69_RS07915 (QLX69_07915) - 1554697..1555584 (-) 888 WP_283191273.1 restriction endonuclease -
  QLX69_RS07920 (QLX69_07920) rlmD 1555949..1557325 (-) 1377 WP_283191274.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  QLX69_RS07925 (QLX69_07925) - 1557597..1558601 (-) 1005 WP_283191275.1 diacylglycerol kinase -
  QLX69_RS07930 (QLX69_07930) gatB 1558612..1560036 (-) 1425 WP_194177185.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  QLX69_RS07935 (QLX69_07935) gatA 1560038..1561510 (-) 1473 WP_003711529.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  QLX69_RS07940 (QLX69_07940) gatC 1561510..1561827 (-) 318 WP_003711548.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  QLX69_RS07945 (QLX69_07945) - 1562111..1563220 (-) 1110 WP_283191276.1 CamS family sex pheromone protein -
  QLX69_RS07950 (QLX69_07950) ligA 1563224..1565263 (-) 2040 WP_283191277.1 NAD-dependent DNA ligase LigA -
  QLX69_RS07955 (QLX69_07955) pcrA 1565286..1567574 (-) 2289 WP_194176097.1 DNA helicase PcrA -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50029.25 Da        Isoelectric Point: 8.4339

>NTDB_id=832006 QLX69_RS07780 WP_283191259.1 1529890..1531266(-) (radA) [Limosilactobacillus oris strain BSLO1801]
MAKVRTQYVCQNCGYSSRRYLGRCPNCGEWNSLVEEQVHSESKAALTRATTTLTGLVAKPQKISEINSKETPRVKTKLNE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLGVSGDEFYVYPETNMDSI
KETIRDLQPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITVFVVGHVTKGGALAGPKILEHMVDTVLY
FEGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLSEVKNPSEIFLEERLRDATGSSVVVSLEGTRPILVEIQALVTPTV
YGNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTRPADAFVGEVGL
TGEIRRVNRIEQRVAEAQKLGFERIFIPKNNLKGWTPPTGIEVVGVTTLREALRLALG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=832006 QLX69_RS07780 WP_283191259.1 1529890..1531266(-) (radA) [Limosilactobacillus oris strain BSLO1801]
ATGGCAAAGGTACGGACACAGTACGTGTGTCAAAATTGCGGTTATAGCTCCCGCCGTTACCTTGGTCGGTGCCCCAACTG
CGGGGAATGGAACTCGTTGGTAGAAGAACAAGTTCACTCAGAAAGCAAGGCCGCGCTGACGCGGGCAACGACGACCCTGA
CCGGGTTGGTTGCTAAGCCGCAAAAAATTAGTGAGATTAATAGTAAGGAAACGCCCCGGGTCAAGACCAAGCTCAATGAG
CTGAACCGGGTTCTCGGCGGCGGAATCGTTCCCGGCTCCCTAATCCTGATTGGTGGGGATCCCGGTATCGGGAAATCAAC
CCTCCTTCTTCAGGTTTCCGGCCAGCTCAGCGACGAACACCACCGGGTCCTGTATGTTTCAGGAGAGGAAAGCGGCACAC
AGATTAAGATGCGGGCAGAGCGCCTCGGCGTGTCCGGGGATGAATTTTACGTTTACCCGGAAACCAATATGGATAGTATT
AAGGAAACGATTCGTGACCTCCAGCCCGAATACGTAGTGATTGACTCTGTCCAAACAATGCAGGCAACGGACGTCAGTTC
AGCGATCGGTAGTGTTTCCCAAATTCGGGAAGTTACTGCCCAGTTGATGCAAATTGCCAAGAGCAATAACATTACTGTTT
TCGTCGTGGGCCACGTGACCAAGGGCGGTGCCTTAGCCGGGCCGAAGATTCTGGAGCACATGGTGGACACGGTGCTCTAC
TTTGAAGGGGACCTCCACCATACTTACCGGATCCTCCGCTCGGTCAAAAACCGTTTTGGCTCGACCAATGAACTGGGGAT
TTTTGAAATGCATACCAACGGCCTCAGTGAGGTTAAGAACCCCTCAGAGATTTTCCTTGAGGAACGACTTCGTGACGCCA
CCGGCTCTTCCGTAGTGGTTTCACTGGAGGGGACGCGGCCCATTTTGGTAGAAATTCAAGCCCTGGTGACTCCCACTGTC
TACGGGAATGCTCAGCGAACCGCTACCGGTTTGAGTCGAAACAGAGTATCATTGATAATGGCCGTCTTGGAAAAGCGGGC
CAACCTGATGCTGCAAAATCAGGATGCCTACCTCAAAGCAGCGGGCGGTGTCAAGCTGGATGAACCGGCAATCGACCTGG
CAATCGCAGTCAGCATTGCTTCTAGTTACCGGGACAAGGGGACCCGTCCCGCTGACGCCTTCGTCGGCGAAGTCGGCTTG
ACCGGTGAGATTCGCCGGGTGAACCGGATTGAACAGCGGGTCGCTGAGGCGCAGAAGCTCGGCTTTGAACGAATCTTCAT
CCCCAAGAACAACTTAAAGGGGTGGACACCACCAACCGGGATTGAGGTCGTCGGGGTTACGACTTTGCGTGAAGCACTCC
GGCTGGCCCTCGGCTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-223)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.401

99.127

0.668
  radA Streptococcus mitis NCTC 12261

67.401

99.127

0.668
  radA Streptococcus pneumoniae Rx1

67.181

99.127

0.666
  radA Streptococcus pneumoniae D39

67.181

99.127

0.666
  radA Streptococcus pneumoniae R6

67.181

99.127

0.666
  radA Streptococcus pneumoniae TIGR4

67.181

99.127

0.666
  radA Bacillus subtilis subsp. subtilis str. 168

62.907

100

0.633