Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   U0530_RS13330 Genome accession   NZ_CP139853
Coordinates   2844165..2844794 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain Nord122     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2839165..2849794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0530_RS13310 (U0530_13310) ycbZ 2839555..2841315 (-) 1761 WP_000156476.1 AAA family ATPase -
  U0530_RS13315 (U0530_13315) matP 2841501..2841953 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  U0530_RS13320 (U0530_13320) ompA 2842028..2843080 (-) 1053 WP_000750418.1 porin OmpA -
  U0530_RS13325 (U0530_13325) sulA 2843437..2843946 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  U0530_RS13330 (U0530_13330) sxy/tfoX 2844165..2844794 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  U0530_RS13335 (U0530_13335) yccS 2844757..2846919 (-) 2163 WP_000875041.1 YccS family putative transporter -
  U0530_RS13340 (U0530_13340) yccF 2846929..2847375 (-) 447 WP_001261235.1 YccF domain-containing protein -
  U0530_RS13345 (U0530_13345) helD 2847498..2849552 (+) 2055 WP_020232990.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=831997 U0530_RS13330 WP_000839153.1 2844165..2844794(+) (sxy/tfoX) [Escherichia coli strain Nord122]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=831997 U0530_RS13330 WP_000839153.1 2844165..2844794(+) (sxy/tfoX) [Escherichia coli strain Nord122]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1