Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   U0530_RS00075 Genome accession   NZ_CP139853
Coordinates   10027..11247 (-) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain Nord122     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 5027..16247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0530_RS00015 (U0530_00015) - 5115..5570 (+) 456 WP_000581502.1 IrmA family protein -
  U0530_RS00025 (U0530_00020) - 5645..5842 (+) 198 Protein_3 DUF905 family protein -
  U0530_RS00030 (U0530_00025) - 5960..6778 (+) 819 WP_001234593.1 DUF932 domain-containing protein -
  U0530_RS00035 (U0530_00030) - 6870..7355 (+) 486 WP_000214310.1 antirestriction protein -
  U0530_RS00040 (U0530_00035) radC 7371..7847 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  U0530_RS00045 (U0530_00040) - 7916..8137 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  U0530_RS00050 (U0530_00045) cbeA 8211..8579 (+) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  U0530_RS00055 (U0530_00050) cbtA 8668..9045 (+) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  U0530_RS00060 (U0530_00055) - 9096..9472 (+) 377 Protein_10 DUF5983 family protein -
  U0530_RS00065 (U0530_00060) - 9489..9665 (+) 177 WP_000839288.1 DUF957 domain-containing protein -
  U0530_RS00070 (U0530_00065) - 9771..10001 (+) 231 Protein_12 hypothetical protein -
  U0530_RS00075 (U0530_00070) kpsS 10027..11247 (-) 1221 WP_000794251.1 capsule biosynthesis protein Regulator
  U0530_RS00080 (U0530_00075) - 12410..14557 (-) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  U0530_RS00085 (U0530_00080) rfbC 14607..15158 (-) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  U0530_RS00090 (U0530_00085) rfbA 15224..16102 (-) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=831944 U0530_RS00075 WP_000794251.1 10027..11247(-) (kpsS) [Escherichia coli strain Nord122]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=831944 U0530_RS00075 WP_000794251.1 10027..11247(-) (kpsS) [Escherichia coli strain Nord122]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGAGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382