Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QFW87_RS25490 Genome accession   NZ_CP125618
Coordinates   5569042..5570409 (-) Length   455 a.a.
NCBI ID   WP_008149143.1    Uniprot ID   -
Organism   Pseudomonas sp. PMCC200344     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5564042..5575409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFW87_RS25465 - 5564353..5564901 (+) 549 WP_283189162.1 hypothetical protein -
  QFW87_RS25470 yjiA 5564976..5565944 (-) 969 WP_074871071.1 GTPase -
  QFW87_RS25475 - 5566106..5566303 (-) 198 WP_283181748.1 YbdD/YjiX family protein -
  QFW87_RS25480 - 5566318..5568384 (-) 2067 WP_283189163.1 carbon starvation CstA family protein -
  QFW87_RS25485 - 5568543..5568911 (+) 369 WP_283189164.1 PilZ domain-containing protein -
  QFW87_RS25490 radA 5569042..5570409 (-) 1368 WP_008149143.1 DNA repair protein RadA Machinery gene
  QFW87_RS25495 - 5570455..5571009 (-) 555 WP_283181751.1 ankyrin repeat domain-containing protein -
  QFW87_RS25500 katB 5571067..5572608 (-) 1542 WP_283189165.1 catalase KatB -
  QFW87_RS25505 mscL 5572894..5573307 (+) 414 WP_283181753.1 large-conductance mechanosensitive channel protein MscL -
  QFW87_RS25510 - 5573353..5574129 (-) 777 WP_283189166.1 ferredoxin--NADP reductase -
  QFW87_RS25515 - 5574473..5575204 (+) 732 WP_283189167.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48773.25 Da        Isoelectric Point: 6.8987

>NTDB_id=831929 QFW87_RS25490 WP_008149143.1 5569042..5570409(-) (radA) [Pseudomonas sp. PMCC200344]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWTGQQAQIKTLAEVSVEEIPRFSTASSEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKVMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=831929 QFW87_RS25490 WP_008149143.1 5569042..5570409(-) (radA) [Pseudomonas sp. PMCC200344]
ATGGCCAAGGCCAAGCGCATGTATGGCTGCACCGAGTGCGGCTCAACCTTCCCCAAGTGGGCTGGCCAGTGCGGCGAGTG
CGGGGCCTGGAACACCCTGACCGAAACCATGGTGGAGAGCGGTGGTGCCGCAGCCCCCAGCGGTCGCACCGGCTGGACCG
GCCAACAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATTCCGCGTTTTTCCACAGCCTCCAGTGAACTG
GATCGGGTGCTGGGCGGTGGTCTGGTAGACGGTTCGGTGGTGCTGATCGGCGGTGATCCGGGCATCGGCAAATCGACCAT
TCTGCTGCAAACCTTGTGCAACCTCGCCAAAGTCATGCCGGCACTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGTCTCGGTTTGCCTCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACCGCCCGGCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATTCAGACGATCTTCACCGAGCAGCTGCAATCGGCACC
AGGCGGCGTCTCGCAGGTTCGGGAAAGCGCGGCGTTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCCATTTTCCTGG
TCGGTCACGTGACGAAAGAAGGTGCATTGGCGGGACCGCGAGTGCTGGAGCACATGGTCGACACGGTTCTGTATTTCGAA
GGCGAATCCGATGGGCGTTTGCGTTTGCTGCGAGCGGTGAAGAACCGTTTCGGCGCCGTCAACGAACTGGGCGTATTCGG
TATGACCGACAAGGGGCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGTGCGCAGGAAGAAGTGCCGGGCA
GTGTGGTCATGGCGACGTGGGAAGGGACGCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGACGACAGTCACCTGGCC
AATCCACGTCGGGTAACGCTGGGGCTGGACCAGAACCGACTGGCGATGTTGTTGGCGGTGCTGCACCGTCACGGCGGCAT
TCCGACCCACGATCAGGATGTGTTTCTCAACGTGGTTGGCGGGGTGAAGGTGCTGGAAACGGCATCCGATCTGGCGCTGA
TGGCGGCAGTCATGTCCAGTTTGCGTAACCGGCCACTGCCCCACGATCTGCTGGTGTTCGGCGAAGTCGGGCTTTCCGGC
GAAGTACGCCCGGTGCCGAGCGGCCAGGAACGCTTGAAAGAAGCCGCCAAACACGGCTTCAAACGCGCCATCGTGCCCAA
GGGCAATGCGCCGAAAGAGGCGCCGCCGGGGTTGCAGATTATTGCCGTGACGCGTCTGGAGCAGGCGTTGGACGCCCTCT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

100

0.49
  radA Streptococcus pneumoniae Rx1

46.739

100

0.473
  radA Streptococcus pneumoniae R6

46.739

100

0.473
  radA Streptococcus pneumoniae TIGR4

46.739

100

0.473
  radA Streptococcus pneumoniae D39

46.739

100

0.473
  radA Streptococcus mitis SK321

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.711

100

0.468