Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   U0535_RS16475 Genome accession   NZ_CP139846
Coordinates   2771020..2771487 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain Nord58     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2766020..2776487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0535_RS16430 (U0535_16430) rplP 2766130..2766540 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  U0535_RS16435 (U0535_16435) rpsC 2766553..2767254 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  U0535_RS16440 (U0535_16440) rplV 2767272..2767604 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  U0535_RS16445 (U0535_16445) rpsS 2767619..2767897 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  U0535_RS16450 (U0535_16450) rplB 2767914..2768735 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  U0535_RS16455 (U0535_16455) rplW 2768753..2769055 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  U0535_RS16460 (U0535_16460) rplD 2769052..2769657 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  U0535_RS16465 (U0535_16465) rplC 2769668..2770297 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  U0535_RS16470 (U0535_16470) rpsJ 2770330..2770641 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  U0535_RS16475 (U0535_16475) pilD 2771020..2771487 (+) 468 WP_000340159.1 prepilin peptidase Machinery gene
  U0535_RS16480 (U0535_16480) bfr 2771484..2771960 (-) 477 WP_000675515.1 bacterioferritin -
  U0535_RS16485 (U0535_16485) bfd 2772033..2772227 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  U0535_RS16490 (U0535_16490) tuf 2772410..2773594 (-) 1185 WP_000031783.1 elongation factor Tu -
  U0535_RS16495 (U0535_16495) fusA 2773665..2775779 (-) 2115 WP_000124700.1 elongation factor G -
  U0535_RS16500 (U0535_16500) rpsG 2775876..2776346 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=831900 U0535_RS16475 WP_000340159.1 2771020..2771487(+) (pilD) [Escherichia coli strain Nord58]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=831900 U0535_RS16475 WP_000340159.1 2771020..2771487(+) (pilD) [Escherichia coli strain Nord58]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAAGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368