Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMK16_RS06905 Genome accession   NZ_CP125396
Coordinates   1323533..1324501 (+) Length   322 a.a.
NCBI ID   WP_002858230.1    Uniprot ID   A0A3X8NCC0
Organism   Campylobacter jejuni strain SKBC57     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1318533..1329501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS06880 (QMK16_06880) cdsA 1319443..1320168 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QMK16_RS06885 (QMK16_06885) - 1320177..1320515 (-) 339 WP_002852397.1 hypothetical protein -
  QMK16_RS06890 (QMK16_06890) - 1320517..1321824 (-) 1308 WP_002858307.1 NFACT family protein -
  QMK16_RS06895 (QMK16_06895) mobA 1321886..1322461 (+) 576 WP_002858185.1 molybdenum cofactor guanylyltransferase -
  QMK16_RS06900 (QMK16_06900) pldA 1322458..1323447 (+) 990 WP_002858083.1 phospholipase A -
  QMK16_RS06905 (QMK16_06905) ceuB 1323533..1324501 (+) 969 WP_002858230.1 ABC transporter permease Machinery gene
  QMK16_RS06910 (QMK16_06910) ceuC 1324494..1325432 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  QMK16_RS06915 (QMK16_06915) ceuD 1325429..1326184 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  QMK16_RS06920 (QMK16_06920) ceuB 1326197..1327189 (+) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK16_RS06930 (QMK16_06930) - 1327415..1327969 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35451.37 Da        Isoelectric Point: 9.6678

>NTDB_id=831900 QMK16_RS06905 WP_002858230.1 1323533..1324501(+) (ceuB) [Campylobacter jejuni strain SKBC57]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVIQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831900 QMK16_RS06905 WP_002858230.1 1323533..1324501(+) (ceuB) [Campylobacter jejuni strain SKBC57]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATACAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3X8NCC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988