Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QMK16_RS03335 Genome accession   NZ_CP125396
Coordinates   638384..638821 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain SKBC57     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 633384..643821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK16_RS03315 (QMK16_03315) kdpD 633876..635696 (+) 1821 WP_002858538.1 sensor histidine kinase KdpD -
  QMK16_RS03320 (QMK16_03320) uvrB 635798..637771 (-) 1974 WP_002858504.1 excinuclease ABC subunit UvrB -
  QMK16_RS03325 (QMK16_03325) - 637925..638155 (+) 231 WP_002852327.1 hypothetical protein -
  QMK16_RS03330 (QMK16_03330) - 638145..638387 (+) 243 WP_002854947.1 hypothetical protein -
  QMK16_RS03335 (QMK16_03335) Cj0683 638384..638821 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK16_RS03340 (QMK16_03340) priA 638803..640656 (+) 1854 WP_002858495.1 primosomal protein N' -
  QMK16_RS03345 (QMK16_03345) cipA 640666..642060 (-) 1395 WP_002916267.1 DUF2972 domain-containing protein -
  QMK16_RS03350 (QMK16_03350) ispG 642206..643279 (+) 1074 WP_002854766.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=831889 QMK16_RS03335 WP_002852324.1 638384..638821(+) (Cj0683) [Campylobacter jejuni strain SKBC57]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=831889 QMK16_RS03335 WP_002852324.1 638384..638821(+) (Cj0683) [Campylobacter jejuni strain SKBC57]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1