Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMK12_RS06260 Genome accession   NZ_CP125395
Coordinates   1236812..1237780 (+) Length   322 a.a.
NCBI ID   WP_002893972.1    Uniprot ID   A0A3H8JWJ4
Organism   Campylobacter jejuni strain SKBC94     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231812..1242780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK12_RS06235 (QMK12_06235) cdsA 1232720..1233445 (-) 726 WP_052825500.1 phosphatidate cytidylyltransferase -
  QMK12_RS06240 (QMK12_06240) - 1233456..1233794 (-) 339 WP_002855905.1 hypothetical protein -
  QMK12_RS06245 (QMK12_06245) - 1233796..1235103 (-) 1308 WP_088303620.1 NFACT family protein -
  QMK12_RS06250 (QMK12_06250) mobA 1235165..1235740 (+) 576 WP_052825502.1 molybdenum cofactor guanylyltransferase -
  QMK12_RS06255 (QMK12_06255) pldA 1235737..1236726 (+) 990 WP_052825503.1 phospholipase A -
  QMK12_RS06260 (QMK12_06260) ceuB 1236812..1237780 (+) 969 WP_002893972.1 ABC transporter permease Machinery gene
  QMK12_RS06265 (QMK12_06265) ceuC 1237773..1238711 (+) 939 WP_088303621.1 iron chelate uptake ABC transporter family permease subunit -
  QMK12_RS06270 (QMK12_06270) ceuD 1238708..1239463 (+) 756 WP_070316857.1 ABC transporter ATP-binding protein -
  QMK12_RS06275 (QMK12_06275) ceuB 1239476..1240468 (+) 993 WP_052949159.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK12_RS06285 (QMK12_06285) - 1240694..1241248 (-) 555 WP_002892921.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35425.35 Da        Isoelectric Point: 9.6678

>NTDB_id=831872 QMK12_RS06260 WP_002893972.1 1236812..1237780(+) (ceuB) [Campylobacter jejuni strain SKBC94]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831872 QMK12_RS06260 WP_002893972.1 1236812..1237780(+) (ceuB) [Campylobacter jejuni strain SKBC94]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATCCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTTACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGGACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCATC
TTTTTTCACTCAAGCTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3H8JWJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.689

100

0.997