Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMK13_RS06790 Genome accession   NZ_CP125390
Coordinates   1316167..1316682 (-) Length   171 a.a.
NCBI ID   WP_283151905.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1311167..1321682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS06775 (QMK13_06775) - 1311278..1312999 (-) 1722 WP_283151903.1 flagellin A -
  QMK13_RS06780 (QMK13_06780) - 1313096..1314910 (-) 1815 WP_283151904.1 motility associated factor glycosyltransferase family protein -
  QMK13_RS06785 (QMK13_06785) - 1314920..1316167 (-) 1248 WP_214128291.1 DUF2920 family protein -
  QMK13_RS06790 (QMK13_06790) ctsG 1316167..1316682 (-) 516 WP_283151905.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK13_RS06795 (QMK13_06795) tsaD 1316683..1317690 (-) 1008 WP_002871412.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMK13_RS06800 (QMK13_06800) - 1317687..1319081 (-) 1395 WP_283151640.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMK13_RS06805 (QMK13_06805) dxr 1319083..1320153 (-) 1071 WP_224379169.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMK13_RS06810 (QMK13_06810) cdsA 1320150..1320875 (-) 726 WP_224379170.1 phosphatidate cytidylyltransferase -
  QMK13_RS06815 (QMK13_06815) - 1320884..1321222 (-) 339 WP_002855905.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18635.54 Da        Isoelectric Point: 7.8498

>NTDB_id=831844 QMK13_RS06790 WP_283151905.1 1316167..1316682(-) (ctsG) [Campylobacter jejuni strain SKBC9]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVKFRVGDDKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENVNFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=831844 QMK13_RS06790 WP_283151905.1 1316167..1316682(-) (ctsG) [Campylobacter jejuni strain SKBC9]
ATGAAAAAAGCTTTTACCATATTAGAACTTGTTTTTGTGATTGTTATTTTAGGAATTTTAGCCGCTATTGCTTTACCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGTAAGTCTTTAAATAACCTTAAAACTTTGATCAACGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTCGATCTTGGCAAT
TTTAATGGTACAAAAGAAGTAAAATTTCGCGTAGGTGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATGTAAACTTTACAAGTTCTTCAAGTAATAAAGCTTGTGTGATCTTAAGCAAGAATGAAAATTTTAAAAATCTA
GCGAGCAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

94.737

100

0.947