Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QMK13_RS05630 Genome accession   NZ_CP125390
Coordinates   1098123..1099073 (+) Length   316 a.a.
NCBI ID   WP_283151867.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1093123..1104073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS05605 (QMK13_05605) - 1093472..1094494 (-) 1023 WP_283151866.1 hypothetical protein -
  QMK13_RS05610 (QMK13_05610) - 1094565..1095338 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  QMK13_RS05615 (QMK13_05615) wlaTB 1095331..1096287 (+) 957 WP_002869613.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  QMK13_RS05620 (QMK13_05620) wlaTC 1096284..1097243 (+) 960 WP_048818625.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  QMK13_RS05625 (QMK13_05625) - 1097246..1098064 (-) 819 WP_002933186.1 glycosyltransferase family 2 protein -
  QMK13_RS05630 (QMK13_05630) waaF 1098123..1099073 (+) 951 WP_283151867.1 lipopolysaccharide heptosyltransferase II Regulator
  QMK13_RS05635 (QMK13_05635) - 1099125..1100624 (+) 1500 WP_002933196.1 MBOAT family O-acyltransferase -
  QMK13_RS05640 (QMK13_05640) - 1100772..1101749 (+) 978 WP_002933198.1 hypothetical protein -
  QMK13_RS05645 (QMK13_05645) gmhA 1101753..1102313 (-) 561 WP_283151868.1 D-sedoheptulose 7-phosphate isomerase -
  QMK13_RS05650 (QMK13_05650) rfaE1 1102310..1103695 (-) 1386 WP_070307166.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36183.58 Da        Isoelectric Point: 10.1851

>NTDB_id=831839 QMK13_RS05630 WP_283151867.1 1098123..1099073(+) (waaF) [Campylobacter jejuni strain SKBC9]
MKIFIHLPTWLGDAVMASPALYTIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLHKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENATLVHLDLACIPCMQKTCPLKHHKCMKDLKPERVIEEIKKLSTP

Nucleotide


Download         Length: 951 bp        

>NTDB_id=831839 QMK13_RS05630 WP_283151867.1 1098123..1099073(+) (waaF) [Campylobacter jejuni strain SKBC9]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTACAAACAAGCCCTATCTTTACACAAAGAACTTGGTAAAATTGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATATCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGTTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGTCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTTATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCAGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCCACAAAATTTACCCAAACTTCACC
TTGGCAAAACGAAAACGCAACATTAGTGCATTTAGATCTAGCTTGTATACCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCATAAATGTATGAAAGATTTAAAGCCTGAAAGAGTGATAGAAGAAATTAAAAAATTAAGCACCCCATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.888

99.051

0.94