Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   QMK13_RS03240 Genome accession   NZ_CP125390
Coordinates   633893..634330 (+) Length   145 a.a.
NCBI ID   WP_004316749.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC9     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 628893..639330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK13_RS03220 (QMK13_03220) kdpD 629381..631312 (+) 1932 WP_057100497.1 sensor histidine kinase KdpD -
  QMK13_RS03225 (QMK13_03225) uvrB 631307..633280 (-) 1974 WP_004316755.1 excinuclease ABC subunit UvrB -
  QMK13_RS03230 (QMK13_03230) - 633434..633664 (+) 231 WP_002852327.1 hypothetical protein -
  QMK13_RS03235 (QMK13_03235) - 633654..633896 (+) 243 WP_002854947.1 hypothetical protein -
  QMK13_RS03240 (QMK13_03240) Cj0683 633893..634330 (+) 438 WP_004316749.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK13_RS03245 (QMK13_03245) priA 634312..636165 (+) 1854 WP_004316747.1 primosomal protein N' -
  QMK13_RS03250 (QMK13_03250) cipA 636175..637568 (-) 1394 Protein_631 DUF2972 domain-containing protein -
  QMK13_RS03255 (QMK13_03255) ispG 637714..638787 (+) 1074 WP_004316745.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16739.68 Da        Isoelectric Point: 8.0993

>NTDB_id=831834 QMK13_RS03240 WP_004316749.1 633893..634330(+) (Cj0683) [Campylobacter jejuni strain SKBC9]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCSNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=831834 QMK13_RS03240 WP_004316749.1 633893..634330(+) (Cj0683) [Campylobacter jejuni strain SKBC9]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCGCAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTCAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGCTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.31

100

0.993