Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   QMK10_RS06975 Genome accession   NZ_CP125388
Coordinates   1356167..1357135 (+) Length   322 a.a.
NCBI ID   WP_002865440.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1351167..1362135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK10_RS06950 (QMK10_06950) cdsA 1352076..1352801 (-) 726 WP_224379170.1 phosphatidate cytidylyltransferase -
  QMK10_RS06955 (QMK10_06955) - 1352810..1353148 (-) 339 WP_002855905.1 hypothetical protein -
  QMK10_RS06960 (QMK10_06960) - 1353150..1354457 (-) 1308 WP_224379171.1 NFACT family protein -
  QMK10_RS06965 (QMK10_06965) mobA 1354520..1355095 (+) 576 WP_052778358.1 molybdenum cofactor guanylyltransferase -
  QMK10_RS06970 (QMK10_06970) pldA 1355092..1356081 (+) 990 WP_057100663.1 phospholipase A -
  QMK10_RS06975 (QMK10_06975) ceuB 1356167..1357135 (+) 969 WP_002865440.1 ABC transporter permease Machinery gene
  QMK10_RS06980 (QMK10_06980) ceuC 1357128..1358066 (+) 939 WP_002867309.1 iron chelate uptake ABC transporter family permease subunit -
  QMK10_RS06985 (QMK10_06985) ceuD 1358063..1358818 (+) 756 WP_002871403.1 ABC transporter ATP-binding protein -
  QMK10_RS06990 (QMK10_06990) ceuB 1358831..1359823 (+) 993 WP_002938643.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK10_RS06995 (QMK10_06995) - 1359978..1360199 (+) 222 WP_002853781.1 hypothetical protein -
  QMK10_RS07000 (QMK10_07000) - 1360200..1360481 (+) 282 WP_074469082.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMK10_RS07010 (QMK10_07010) - 1360841..1361395 (-) 555 WP_074469083.1 hypothetical protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35439.37 Da        Isoelectric Point: 9.6678

>NTDB_id=831817 QMK10_RS06975 WP_002865440.1 1356167..1357135(+) (ceuB) [Campylobacter jejuni strain SKBC25]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831817 QMK10_RS06975 WP_002865440.1 1356167..1357135(+) (ceuB) [Campylobacter jejuni strain SKBC25]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACCCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGCGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACAGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTTACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGCATTATTAGTGCTATAACTACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGTTACAAGGTAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTGGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGGATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGATTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.379

100

0.994