Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | QMK10_RS05985 | Genome accession | NZ_CP125388 |
| Coordinates | 1158009..1158959 (+) | Length | 316 a.a. |
| NCBI ID | WP_283151599.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain SKBC25 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1140344..1169078 | 1158009..1158959 | within | 0 |
Gene organization within MGE regions
Location: 1140344..1169078
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK10_RS05895 (QMK10_05895) | pglI | 1140344..1141273 (-) | 930 | WP_002856262.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| QMK10_RS05900 (QMK10_05900) | pglH | 1141266..1142345 (-) | 1080 | WP_079264662.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| QMK10_RS05905 (QMK10_05905) | pglK | 1142342..1144036 (-) | 1695 | WP_087704579.1 | ABC-type lipopolysaccharide transporter PglK | - |
| QMK10_RS05910 (QMK10_05910) | galE | 1144030..1145016 (-) | 987 | WP_002893768.1 | UDP-glucose 4-epimerase GalE | - |
| QMK10_RS05915 (QMK10_05915) | - | 1145076..1145870 (-) | 795 | WP_283151590.1 | 3'-5' exonuclease | - |
| QMK10_RS05920 (QMK10_05920) | waaC | 1145937..1146965 (+) | 1029 | WP_283151591.1 | lipopolysaccharide heptosyltransferase I | - |
| QMK10_RS05925 (QMK10_05925) | htrB | 1146955..1147842 (+) | 888 | WP_283151592.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| QMK10_RS05930 (QMK10_05930) | - | 1147839..1149386 (+) | 1548 | WP_283151593.1 | glycosyltransferase | - |
| QMK10_RS05935 (QMK10_05935) | - | 1149390..1150562 (+) | 1173 | WP_283151594.1 | glycosyltransferase family 2 protein | - |
| QMK10_RS05940 (QMK10_05940) | - | 1150611..1151678 (+) | 1068 | WP_002868608.1 | beta-1,4-N-acetylgalactosaminyltransferase | - |
| QMK10_RS05945 (QMK10_05945) | - | 1151650..1152543 (-) | 894 | WP_002859246.1 | glycosyltransferase family 2 protein | - |
| QMK10_RS05950 (QMK10_05950) | - | 1152632..1153511 (+) | 880 | Protein_1151 | alpha-2,3-sialyltransferase | - |
| QMK10_RS05955 (QMK10_05955) | neuB | 1153512..1154552 (+) | 1041 | WP_283151595.1 | N-acetylneuraminate synthase | - |
| QMK10_RS05960 (QMK10_05960) | neuC | 1154549..1155667 (+) | 1119 | WP_283151596.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| QMK10_RS05965 (QMK10_05965) | - | 1155664..1156329 (+) | 666 | WP_002894653.1 | acylneuraminate cytidylyltransferase family protein | - |
| QMK10_RS05970 (QMK10_05970) | - | 1156317..1156490 (+) | 174 | WP_002896733.1 | hypothetical protein | - |
| QMK10_RS05975 (QMK10_05975) | - | 1156532..1157146 (+) | 615 | WP_283151597.1 | CatB-related O-acetyltransferase | - |
| QMK10_RS05980 (QMK10_05980) | waaV | 1157138..1157950 (-) | 813 | WP_283151598.1 | glycosyltransferase family 2 protein | - |
| QMK10_RS05985 (QMK10_05985) | waaF | 1158009..1158959 (+) | 951 | WP_283151599.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| QMK10_RS05990 (QMK10_05990) | - | 1158945..1159720 (-) | 776 | Protein_1159 | glycosyltransferase family 25 protein | - |
| QMK10_RS05995 (QMK10_05995) | gmhA | 1159720..1160280 (-) | 561 | WP_002868599.1 | D-sedoheptulose 7-phosphate isomerase | - |
| QMK10_RS06000 (QMK10_06000) | rfaE1 | 1160277..1161662 (-) | 1386 | WP_070307166.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| QMK10_RS06005 (QMK10_06005) | rfaD | 1161655..1162608 (-) | 954 | WP_283151600.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| QMK10_RS06010 (QMK10_06010) | gmhB | 1162609..1163170 (-) | 562 | Protein_1163 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| QMK10_RS06015 (QMK10_06015) | - | 1163252..1163554 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| QMK10_RS06020 (QMK10_06020) | ccoS | 1163577..1163783 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| QMK10_RS06025 (QMK10_06025) | - | 1163780..1166137 (-) | 2358 | WP_283151601.1 | heavy metal translocating P-type ATPase | - |
| QMK10_RS06030 (QMK10_06030) | rho | 1166247..1167545 (+) | 1299 | WP_283151602.1 | transcription termination factor Rho | - |
| QMK10_RS06035 (QMK10_06035) | dnaX | 1167549..1169078 (+) | 1530 | WP_283151603.1 | DNA polymerase III subunit gamma/tau | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36237.87 Da Isoelectric Point: 10.3316
>NTDB_id=831812 QMK10_RS05985 WP_283151599.1 1158009..1158959(+) (waaF) [Campylobacter jejuni strain SKBC25]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKNLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGSTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLHIKAHLKNLKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGSTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLINI
Nucleotide
Download Length: 951 bp
>NTDB_id=831812 QMK10_RS05985 WP_283151599.1 1158009..1158959(+) (waaF) [Campylobacter jejuni strain SKBC25]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGTAAAGAACTTGGTAAAATCGATCTTAGCTTTACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAAACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCAAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCTCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGTAAAGAACTTGGTAAAATCGATCTTAGCTTTACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTCACATAAAAGCTCACCTTAAAAACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAGCCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCAAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCTCCACAAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGCACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAATTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.357 |
99.367 |
0.918 |