Detailed information NTG0831807

Bioinformatically predicted

Overview

• Name: rpoN/rpoN1
• Type: Machinery gene
• Locus tag: U0543_RS07600
• Genome accession: NZ_CP139836
• Coordinates: 1561208..1562656 (-)
• Length: 482 a.a.
• NCBI ID: WP_029423873.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain B84
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1556208..1567656

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0543_RS07575 (U0543_07575)	hisD	1556970..1558259 (-)	1290	WP_001253725.1	histidinol dehydrogenase	-
U0543_RS07580 (U0543_07580)	hisG	1558365..1559048 (-)	684	WP_001000724.1	ATP phosphoribosyltransferase	-
U0543_RS07585 (U0543_07585)	murA	1559048..1560304 (-)	1257	WP_029423872.1	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	-
U0543_RS07590 (U0543_07590)	ibaG	1560311..1560562 (-)	252	WP_001083680.1	BolA family iron metabolism protein IbaG	-
U0543_RS07595 (U0543_07595)	hpf	1560701..1561039 (-)	339	WP_001167461.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
U0543_RS07600 (U0543_07600)	rpoN/rpoN1	1561208..1562656 (-)	1449	WP_029423873.1	RNA polymerase factor sigma-54	Machinery gene

Sequence

Protein

• Length: 482 a.a.
• Molecular weight: 55139.03 Da
• Isoelectric Point: 4.6303

>NTDB_id=831807 U0543_RS07600 WP_029423873.1 1561208..1562656(-) (rpoN/rpoN1) [Acinetobacter baumannii strain B84]
MKLSVGLKVANSLSLTPQLQQAIRLLQLSSLELEQEIQIQLDSNPLLEKVEDESLAESLSTLEHKETDDLTTELNADHLP
DDLPVDTEWDDIYTHQSTALGTPEFEEREDNRQVHLTLKEHILEQVNLLHFSKIDQLIAYCIVDALDDKGFLDAELEEII
LAVQHLLSEMDIDEEVEEDEVLVVLKYIQRLDPIGIGARNLAECLKVQLEFLPRETEYLKEARSLLQYYELLIANDLNKL
LKQTGLSKEQLKFAVDLLKTLKPYPGMDFEKQESEYQIPDVVVAKKDLHWQVQLNPDVMPKLRINSFYSSMIRRADQSDD
NLYLRNQMLEAKNFIKSIDERHKTLLKVATCIVEHQKAFLEIGPEAMKPLVLRDVAEEVELHESTVSRVTTNKYMLTPRG
LFELKYFFSSHVGTTTGGEASSTAIRAMIKKLVSNENPRKPLSDNTIAALLKEEGIEVARRTVAKYRESLHIPSSSERKV
LI

Nucleotide

• Length: 1449 bp

>NTDB_id=831807 U0543_RS07600 WP_029423873.1 1561208..1562656(-) (rpoN/rpoN1) [Acinetobacter baumannii strain B84]
ATGAAATTATCTGTTGGATTGAAAGTTGCGAATTCTTTATCGTTAACGCCTCAATTGCAGCAGGCAATCCGTTTACTACA
ACTTTCTAGCCTAGAGTTAGAGCAAGAAATCCAAATTCAATTAGATAGTAATCCATTACTTGAAAAAGTAGAAGATGAAT
CACTAGCAGAAAGTTTATCTACTTTAGAACACAAAGAAACTGATGACCTTACAACAGAGTTGAATGCTGATCACTTACCT
GATGACTTGCCTGTTGATACTGAATGGGATGACATTTATACACATCAATCCACTGCTTTGGGTACTCCTGAGTTCGAAGA
GCGTGAAGATAATCGCCAAGTTCACCTGACGCTTAAAGAACATATTTTGGAGCAAGTGAACTTACTACATTTTTCAAAAA
TAGATCAGTTGATTGCTTATTGCATAGTTGATGCTTTAGATGATAAAGGTTTTCTGGATGCTGAATTAGAAGAGATTATT
TTGGCAGTACAGCATTTATTAAGTGAGATGGATATAGATGAGGAAGTGGAAGAGGATGAAGTTTTAGTAGTCTTAAAATA
TATTCAACGTCTTGATCCAATTGGTATTGGAGCTCGTAATTTAGCTGAATGTTTAAAAGTTCAGTTGGAGTTCTTGCCTA
GAGAAACTGAATATTTGAAAGAAGCTAGAAGTCTACTTCAATATTACGAATTACTGATTGCGAATGATCTTAATAAATTA
TTGAAGCAAACCGGGCTTTCCAAAGAACAATTAAAATTTGCAGTTGATTTATTAAAAACATTAAAGCCTTATCCAGGCAT
GGATTTTGAAAAGCAAGAATCAGAATATCAAATTCCTGACGTAGTCGTTGCCAAGAAGGACTTGCATTGGCAAGTTCAGT
TAAATCCTGATGTGATGCCAAAATTAAGAATCAATTCTTTTTATTCGAGTATGATTCGTAGGGCAGATCAAAGTGATGAT
AATTTATACCTACGTAATCAAATGCTTGAGGCTAAAAATTTTATAAAAAGTATTGATGAACGGCACAAAACATTATTAAA
AGTTGCGACTTGTATTGTTGAGCATCAAAAAGCATTTCTTGAAATAGGTCCCGAAGCAATGAAACCCTTAGTACTAAGGG
ATGTTGCAGAAGAAGTAGAATTACATGAGTCGACCGTTTCTCGCGTTACCACAAATAAGTATATGCTTACTCCACGTGGA
CTTTTTGAGTTGAAATACTTCTTTTCTAGTCATGTGGGGACAACCACAGGAGGTGAGGCTTCTTCTACCGCAATTCGGGC
GATGATTAAAAAGTTAGTTTCTAATGAAAATCCGCGTAAACCTTTGTCTGATAATACAATTGCTGCTTTATTGAAAGAAG
AGGGAATAGAAGTAGCTAGAAGGACTGTAGCAAAATATAGAGAATCGTTACATATTCCATCGTCATCCGAGAGAAAAGTC
TTGATCTAA

Domains

Predicted by InterProScan.

• Sigma-54 factor, core binding domain (Sigma54_CBD) (111-308)

• Sigma-54, DNA binding domain (Sigma54_DBD) (323-479)

• Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID) (7-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoN/rpoN1	Ralstonia pseudosolanacearum GMI1000	43.333	100	0.459