Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK14_RS07120 Genome accession   NZ_CP125387
Coordinates   1417188..1417499 (-) Length   103 a.a.
NCBI ID   WP_002862131.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC102     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1412188..1422499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK14_RS07100 (QMK14_07100) ctsE 1413057..1414616 (-) 1560 WP_002867035.1 GspE/PulE family protein Machinery gene
  QMK14_RS07105 (QMK14_07105) ctsX 1414606..1415193 (-) 588 WP_002867036.1 hypothetical protein Machinery gene
  QMK14_RS07110 (QMK14_07110) ctsP 1415197..1415805 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  QMK14_RS07115 (QMK14_07115) ctsD 1415798..1417210 (-) 1413 WP_002867037.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK14_RS07120 (QMK14_07120) ctsR 1417188..1417499 (-) 312 WP_002862131.1 hypothetical protein Machinery gene
  QMK14_RS07125 (QMK14_07125) nifJ 1417523..1421083 (-) 3561 WP_002877436.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK14_RS07130 (QMK14_07130) - 1421176..1421817 (-) 642 WP_002867040.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12449.35 Da        Isoelectric Point: 6.4656

>NTDB_id=831798 QMK14_RS07120 WP_002862131.1 1417188..1417499(-) (ctsR) [Campylobacter jejuni strain SKBC102]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831798 QMK14_RS07120 WP_002862131.1 1417188..1417499(-) (ctsR) [Campylobacter jejuni strain SKBC102]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTACTTTAAACTTATAGATAAAGAAAATCGCATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

99.029

100

0.99