Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   QMK14_RS06575 Genome accession   NZ_CP125387
Coordinates   1303556..1304524 (+) Length   322 a.a.
NCBI ID   WP_283155347.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC102     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1298556..1309524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK14_RS06550 (QMK14_06550) cdsA 1299466..1300191 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QMK14_RS06555 (QMK14_06555) - 1300200..1300538 (-) 339 WP_022552380.1 hypothetical protein -
  QMK14_RS06560 (QMK14_06560) - 1300540..1301847 (-) 1308 WP_022552381.1 NFACT family protein -
  QMK14_RS06565 (QMK14_06565) mobA 1301909..1302484 (+) 576 WP_022552382.1 molybdenum cofactor guanylyltransferase -
  QMK14_RS06570 (QMK14_06570) pldA 1302481..1303470 (+) 990 WP_022552383.1 phospholipase A -
  QMK14_RS06575 (QMK14_06575) ceuB 1303556..1304524 (+) 969 WP_283155347.1 ABC transporter permease Machinery gene
  QMK14_RS06580 (QMK14_06580) ceuC 1304517..1305455 (+) 939 WP_002866771.1 iron chelate uptake ABC transporter family permease subunit -
  QMK14_RS06585 (QMK14_06585) ceuD 1305452..1306207 (+) 756 WP_002866772.1 ABC transporter ATP-binding protein -
  QMK14_RS06590 (QMK14_06590) ceuB 1306220..1307212 (+) 993 WP_002866773.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK14_RS06595 (QMK14_06595) - 1307368..1307589 (+) 222 WP_002853781.1 hypothetical protein -
  QMK14_RS06600 (QMK14_06600) - 1307590..1307871 (+) 282 WP_002866775.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMK14_RS06610 (QMK14_06610) - 1308233..1308787 (-) 555 WP_002855904.1 membrane protein -

Sequence


Protein


Download         Length: 322 a.a.        Molecular weight: 35455.37 Da        Isoelectric Point: 9.6678

>NTDB_id=831790 QMK14_RS06575 WP_283155347.1 1303556..1304524(+) (ceuB) [Campylobacter jejuni strain SKBC102]
MFFKHILSLKVLITLLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831790 QMK14_RS06575 WP_283155347.1 1303556..1304524(+) (ceuB) [Campylobacter jejuni strain SKBC102]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAACTTTACTTTTATTTTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains


Predicted by InterproScan.

(15-317)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

98.758

100

0.988