Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | QMK14_RS05600 | Genome accession | NZ_CP125387 |
| Coordinates | 1106649..1107599 (+) | Length | 316 a.a. |
| NCBI ID | WP_002866164.1 | Uniprot ID | Q9ALT6 |
| Organism | Campylobacter jejuni strain SKBC102 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1072528..1136177 | 1106649..1107599 | within | 0 |
Gene organization within MGE regions
Location: 1072528..1136177
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK14_RS05435 (QMK14_05435) | ftsH | 1072528..1074465 (-) | 1938 | WP_002853468.1 | ATP-dependent zinc metalloprotease FtsH | - |
| QMK14_RS05440 (QMK14_05440) | prmA | 1074469..1075314 (-) | 846 | WP_002866133.1 | 50S ribosomal protein L11 methyltransferase | - |
| QMK14_RS05445 (QMK14_05445) | cheY | 1075337..1075729 (-) | 393 | WP_002866134.1 | chemotaxis response regulator CheY | - |
| QMK14_RS05450 (QMK14_05450) | pglG | 1075842..1076735 (-) | 894 | WP_002866135.1 | PDC sensor domain-containing protein | - |
| QMK14_RS05455 (QMK14_05455) | pglF | 1076735..1078507 (-) | 1773 | WP_002866136.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| QMK14_RS05460 (QMK14_05460) | pglE | 1078509..1079669 (-) | 1161 | WP_002866137.1 | UDP-N-acetylbacillosamine transaminase | - |
| QMK14_RS05465 (QMK14_05465) | pglD | 1079767..1080357 (-) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| QMK14_RS05470 (QMK14_05470) | pglC | 1080344..1080946 (-) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| QMK14_RS05475 (QMK14_05475) | pglA | 1080939..1082069 (-) | 1131 | WP_002866138.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| QMK14_RS05480 (QMK14_05480) | pglB | 1082079..1084220 (-) | 2142 | WP_002866139.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| QMK14_RS05485 (QMK14_05485) | pglJ | 1084224..1085321 (-) | 1098 | WP_002866140.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| QMK14_RS05490 (QMK14_05490) | pglI | 1085309..1086238 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| QMK14_RS05495 (QMK14_05495) | pglH | 1086231..1087310 (-) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| QMK14_RS05500 (QMK14_05500) | pglK | 1087307..1089001 (-) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| QMK14_RS05505 (QMK14_05505) | galE | 1088995..1089981 (-) | 987 | WP_052776003.1 | UDP-glucose 4-epimerase GalE | - |
| QMK14_RS05510 (QMK14_05510) | - | 1090040..1090834 (-) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| QMK14_RS05515 (QMK14_05515) | waaC | 1090900..1091928 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| QMK14_RS05520 (QMK14_05520) | htrB | 1091918..1092796 (+) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| QMK14_RS05525 (QMK14_05525) | - | 1092793..1093494 (+) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| QMK14_RS05530 (QMK14_05530) | rfbA | 1093505..1094383 (+) | 879 | WP_002866148.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| QMK14_RS05535 (QMK14_05535) | rfbB | 1094383..1095414 (+) | 1032 | WP_002866149.1 | dTDP-glucose 4,6-dehydratase | - |
| QMK14_RS05540 (QMK14_05540) | wlaRA | 1095417..1095866 (+) | 450 | WP_052776004.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| QMK14_RS05545 (QMK14_05545) | wlaRB | 1095863..1096270 (+) | 408 | WP_002866152.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| QMK14_RS08470 | - | 1096260..1096692 (+) | 433 | Protein_1075 | DapH/DapD/GlmU-related protein | - |
| QMK14_RS08475 | wlaRD | 1096722..1097540 (+) | 819 | WP_002866154.1 | class E lipooligosaccharide biosynthesis sugar-formyltransferase WlaRD | - |
| QMK14_RS05555 (QMK14_05555) | - | 1097559..1098623 (+) | 1065 | WP_002866155.1 | glycosyltransferase family 2 protein | - |
| QMK14_RS05560 (QMK14_05560) | - | 1098635..1099687 (+) | 1053 | WP_041176357.1 | glycosyltransferase family A protein | - |
| QMK14_RS05565 (QMK14_05565) | wlaRG | 1099653..1100738 (+) | 1086 | WP_032603539.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| QMK14_RS05570 (QMK14_05570) | - | 1100772..1102025 (-) | 1254 | WP_002866158.1 | DUF2972 domain-containing protein | - |
| QMK14_RS05575 (QMK14_05575) | - | 1102022..1102882 (-) | 861 | WP_166738763.1 | hypothetical protein | - |
| QMK14_RS05580 (QMK14_05580) | - | 1103091..1103864 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| QMK14_RS05585 (QMK14_05585) | wlaTB | 1103857..1104813 (+) | 957 | WP_002869613.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| QMK14_RS05590 (QMK14_05590) | wlaTC | 1104810..1105769 (+) | 960 | WP_012006735.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| QMK14_RS05595 (QMK14_05595) | - | 1105772..1106590 (-) | 819 | WP_002866163.1 | glycosyltransferase family 2 protein | - |
| QMK14_RS05600 (QMK14_05600) | waaF | 1106649..1107599 (+) | 951 | WP_002866164.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| QMK14_RS05605 (QMK14_05605) | - | 1107650..1109149 (+) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| QMK14_RS05610 (QMK14_05610) | - | 1109297..1110274 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| QMK14_RS05615 (QMK14_05615) | gmhA | 1110278..1110838 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| QMK14_RS05620 (QMK14_05620) | rfaE1 | 1110835..1112220 (-) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| QMK14_RS05625 (QMK14_05625) | rfaD | 1112213..1113166 (-) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| QMK14_RS05630 (QMK14_05630) | gmhB | 1113167..1113727 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| QMK14_RS05635 (QMK14_05635) | - | 1113809..1114111 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| QMK14_RS05640 (QMK14_05640) | ccoS | 1114134..1114340 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| QMK14_RS05645 (QMK14_05645) | - | 1114337..1116694 (-) | 2358 | WP_079264324.1 | heavy metal translocating P-type ATPase | - |
| QMK14_RS05650 (QMK14_05650) | rho | 1116803..1118101 (+) | 1299 | WP_057042622.1 | transcription termination factor Rho | - |
| QMK14_RS05655 (QMK14_05655) | dnaX | 1118105..1119634 (+) | 1530 | WP_057042623.1 | DNA polymerase III subunit gamma/tau | - |
| QMK14_RS05660 (QMK14_05660) | - | 1119631..1119726 (-) | 96 | WP_240693717.1 | hypothetical protein | - |
| QMK14_RS05665 (QMK14_05665) | - | 1119753..1120148 (-) | 396 | WP_079742590.1 | DUF2165 family protein | - |
| QMK14_RS05670 (QMK14_05670) | copA | 1120220..1122319 (-) | 2100 | WP_144745228.1 | copper-translocating P-type ATPase CopA | - |
| QMK14_RS05675 (QMK14_05675) | - | 1122319..1122513 (-) | 195 | WP_002882808.1 | cation transporter | - |
| QMK14_RS05680 (QMK14_05680) | czcD | 1122503..1123453 (-) | 951 | WP_144745229.1 | CDF family cation-efflux transporter CzcD | - |
| QMK14_RS05685 (QMK14_05685) | - | 1123528..1123791 (-) | 264 | WP_144745230.1 | zf-TFIIB domain-containing protein | - |
| QMK14_RS05690 (QMK14_05690) | - | 1123861..1124355 (-) | 495 | WP_144745231.1 | threonine/serine exporter family protein | - |
| QMK14_RS05695 (QMK14_05695) | - | 1124352..1125128 (-) | 777 | WP_002858457.1 | threonine/serine exporter ThrE family protein | - |
| QMK14_RS05700 (QMK14_05700) | ldh | 1125195..1126121 (+) | 927 | WP_002899812.1 | L-lactate dehydrogenase | - |
| QMK14_RS05705 (QMK14_05705) | - | 1126118..1126720 (-) | 603 | WP_002870476.1 | DedA family protein | - |
| QMK14_RS05710 (QMK14_05710) | - | 1126801..1127028 (-) | 228 | WP_002822505.1 | hypothetical protein | - |
| QMK14_RS05715 (QMK14_05715) | - | 1127039..1128487 (-) | 1449 | WP_144745232.1 | DUF3373 family protein | - |
| QMK14_RS05720 (QMK14_05720) | ppi | 1128651..1129133 (-) | 483 | WP_052783965.1 | peptidylprolyl isomerase | - |
| QMK14_RS05725 (QMK14_05725) | - | 1129143..1129850 (-) | 708 | WP_002780603.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| QMK14_RS05730 (QMK14_05730) | - | 1129959..1130300 (+) | 342 | WP_002783013.1 | multidrug efflux SMR transporter | - |
| QMK14_RS05735 (QMK14_05735) | - | 1130300..1130608 (+) | 309 | WP_002892791.1 | multidrug efflux SMR transporter | - |
| QMK14_RS05740 (QMK14_05740) | argS | 1130626..1132218 (-) | 1593 | WP_052783964.1 | arginine--tRNA ligase | - |
| QMK14_RS05745 (QMK14_05745) | tatA | 1132230..1132469 (-) | 240 | WP_002852866.1 | twin-arginine translocase TatA/TatE family subunit | - |
| QMK14_RS05750 (QMK14_05750) | gmk | 1132471..1133088 (-) | 618 | WP_057042626.1 | guanylate kinase | - |
| QMK14_RS05755 (QMK14_05755) | - | 1133091..1134731 (-) | 1641 | WP_002866190.1 | hypothetical protein | - |
| QMK14_RS05760 (QMK14_05760) | fliR | 1134788..1135555 (-) | 768 | WP_002855878.1 | flagellar biosynthetic protein FliR | - |
| QMK14_RS05765 (QMK14_05765) | - | 1135542..1136177 (-) | 636 | WP_012006736.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36378.95 Da Isoelectric Point: 10.3102
>NTDB_id=831785 QMK14_RS05600 WP_002866164.1 1106649..1107599(+) (waaF) [Campylobacter jejuni strain SKBC102]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNTQFILYGSLVSTALFREFPNSKIIIENKQTRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=831785 QMK14_RS05600 WP_002866164.1 1106649..1107599(+) (waaF) [Campylobacter jejuni strain SKBC102]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATACCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAGGGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAAACCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTCAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGTAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.249 |
99.051 |
0.934 |