Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   U0542_RS18390 Genome accession   NZ_CP139831
Coordinates   3670393..3671028 (+) Length   211 a.a.
NCBI ID   WP_000264036.1    Uniprot ID   A0A7U3Y6I5
Organism   Acinetobacter baumannii strain Nord12-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3665393..3676028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS18365 (U0542_18365) - 3666233..3667246 (+) 1014 WP_001096103.1 aminoglycoside phosphotransferase family protein -
  U0542_RS18370 (U0542_18370) murU 3667246..3667935 (+) 690 WP_000646460.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  U0542_RS18375 (U0542_18375) rsmG 3668023..3668655 (+) 633 WP_000553193.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  U0542_RS18380 (U0542_18380) - 3668677..3669459 (+) 783 WP_000057212.1 ParA family protein -
  U0542_RS18385 (U0542_18385) - 3669456..3670343 (+) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  U0542_RS18390 (U0542_18390) exbB 3670393..3671028 (+) 636 WP_000264036.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  U0542_RS18395 (U0542_18395) - 3671044..3671472 (+) 429 WP_000669684.1 biopolymer transporter ExbD -
  U0542_RS18400 (U0542_18400) msbA 3671469..3673195 (+) 1727 Protein_3428 lipid A export permease/ATP-binding protein MsbA -
  U0542_RS18405 (U0542_18405) lpxK 3673198..3674207 (+) 1010 Protein_3429 tetraacyldisaccharide 4'-kinase -
  U0542_RS18410 (U0542_18410) kdsB 3674217..3674978 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  U0542_RS18415 (U0542_18415) - 3674990..3675970 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23212.13 Da        Isoelectric Point: 6.4861

>NTDB_id=831779 U0542_RS18390 WP_000264036.1 3670393..3671028(+) (exbB) [Acinetobacter baumannii strain Nord12-3]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSIMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=831779 U0542_RS18390 WP_000264036.1 3670393..3671028(+) (exbB) [Acinetobacter baumannii strain Nord12-3]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TCATAACAAATTTGGAACAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAACATGGCGAACAATTTGCTCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATCTCTTATTTAGAAAAAAATATTAA
CTTCTTAGGGACCTTAAGTGCTATAGCGCCTCTACTAGGGCTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCACTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCGACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAATCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y6I5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393