Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMK08_RS06560 Genome accession   NZ_CP125386
Coordinates   1288985..1289953 (+) Length   322 a.a.
NCBI ID   WP_022552384.1    Uniprot ID   A0A5T0GNF1
Organism   Campylobacter jejuni strain SKBC41     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1283985..1294953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK08_RS06535 (QMK08_06535) cdsA 1284895..1285620 (-) 726 WP_002858027.1 phosphatidate cytidylyltransferase -
  QMK08_RS06540 (QMK08_06540) - 1285629..1285967 (-) 339 WP_022552380.1 hypothetical protein -
  QMK08_RS06545 (QMK08_06545) - 1285969..1287276 (-) 1308 WP_022552381.1 NFACT family protein -
  QMK08_RS06550 (QMK08_06550) mobA 1287338..1287913 (+) 576 WP_022552382.1 molybdenum cofactor guanylyltransferase -
  QMK08_RS06555 (QMK08_06555) pldA 1287910..1288899 (+) 990 WP_022552383.1 phospholipase A -
  QMK08_RS06560 (QMK08_06560) ceuB 1288985..1289953 (+) 969 WP_022552384.1 ABC transporter permease Machinery gene
  QMK08_RS06565 (QMK08_06565) ceuC 1289946..1290884 (+) 939 WP_002866771.1 iron chelate uptake ABC transporter family permease subunit -
  QMK08_RS06570 (QMK08_06570) ceuD 1290881..1291636 (+) 756 WP_002866772.1 ABC transporter ATP-binding protein -
  QMK08_RS06575 (QMK08_06575) ceuB 1291649..1292641 (+) 993 WP_002866773.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK08_RS06580 (QMK08_06580) - 1292797..1293018 (+) 222 WP_002853781.1 hypothetical protein -
  QMK08_RS06585 (QMK08_06585) - 1293019..1293300 (+) 282 WP_070241073.1 type II toxin-antitoxin system RelE/ParE family toxin -
  QMK08_RS06595 (QMK08_06595) - 1293662..1294216 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35425.35 Da        Isoelectric Point: 9.6678

>NTDB_id=831763 QMK08_RS06560 WP_022552384.1 1288985..1289953(+) (ceuB) [Campylobacter jejuni strain SKBC41]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDVALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831763 QMK08_RS06560 WP_022552384.1 1288985..1289953(+) (ceuB) [Campylobacter jejuni strain SKBC41]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTTTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTGCTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATTACCATAGTTGGCATGGGCGAAGATG
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTGATGATTGTAAGCATTATCACTAGTTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTCATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGATCTTTAATCTTTATCTTTCTTTTGCTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5T0GNF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991