Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | QMK08_RS05585 | Genome accession | NZ_CP125386 |
| Coordinates | 1090155..1091105 (+) | Length | 316 a.a. |
| NCBI ID | WP_053869672.1 | Uniprot ID | A0AAN2YWK7 |
| Organism | Campylobacter jejuni strain SKBC41 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1044448..1108640 | 1090155..1091105 | within | 0 |
Gene organization within MGE regions
Location: 1044448..1108640
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK08_RS05345 (QMK08_05345) | - | 1044448..1046523 (+) | 2076 | WP_002866122.1 | 3'-5' exonuclease | - |
| QMK08_RS05350 (QMK08_05350) | truB | 1046520..1047338 (+) | 819 | WP_002866123.1 | tRNA pseudouridine(55) synthase TruB | - |
| QMK08_RS05355 (QMK08_05355) | csrA | 1047332..1047559 (+) | 228 | WP_002852854.1 | carbon storage regulator CsrA | - |
| QMK08_RS05360 (QMK08_05360) | ispE | 1047556..1048323 (+) | 768 | WP_002877773.1 | 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase | - |
| QMK08_RS05365 (QMK08_05365) | smpB | 1048320..1048772 (+) | 453 | WP_002852861.1 | SsrA-binding protein SmpB | - |
| QMK08_RS05370 (QMK08_05370) | - | 1048783..1049385 (+) | 603 | WP_002856169.1 | TlpA disulfide reductase family protein | - |
| QMK08_RS05375 (QMK08_05375) | clpS | 1049385..1049675 (+) | 291 | WP_002856038.1 | ATP-dependent Clp protease adaptor ClpS | - |
| QMK08_RS05380 (QMK08_05380) | clpA | 1049672..1051801 (+) | 2130 | WP_002866125.1 | AAA family ATPase | - |
| QMK08_RS05385 (QMK08_05385) | aat | 1051776..1052423 (+) | 648 | WP_002826100.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| QMK08_RS05390 (QMK08_05390) | cetZ | 1052446..1053735 (-) | 1290 | WP_002861827.1 | energy taxis response protein CetZ | - |
| QMK08_RS05395 (QMK08_05395) | - | 1053816..1054442 (-) | 627 | WP_002866128.1 | MarC family protein | - |
| QMK08_RS05400 (QMK08_05400) | - | 1054457..1054816 (-) | 360 | WP_002826104.1 | methionine-R-sulfoxide reductase | - |
| QMK08_RS05405 (QMK08_05405) | - | 1054906..1055703 (+) | 798 | WP_002866129.1 | ferritin-like domain-containing protein | - |
| QMK08_RS05410 (QMK08_05410) | pssA | 1055694..1056422 (-) | 729 | WP_002859122.1 | CDP-diacylglycerol--serine O-phosphatidyltransferase | - |
| QMK08_RS05415 (QMK08_05415) | - | 1056432..1057049 (-) | 618 | WP_002866132.1 | phosphatidylserine decarboxylase | - |
| QMK08_RS05420 (QMK08_05420) | ftsH | 1057046..1058983 (-) | 1938 | WP_002853468.1 | ATP-dependent zinc metalloprotease FtsH | - |
| QMK08_RS05425 (QMK08_05425) | prmA | 1058987..1059832 (-) | 846 | WP_002866133.1 | 50S ribosomal protein L11 methyltransferase | - |
| QMK08_RS05430 (QMK08_05430) | cheY | 1059855..1060247 (-) | 393 | WP_002866134.1 | chemotaxis response regulator CheY | - |
| QMK08_RS05435 (QMK08_05435) | pglG | 1060360..1061253 (-) | 894 | WP_283146530.1 | PDC sensor domain-containing protein | - |
| QMK08_RS05440 (QMK08_05440) | pglF | 1061253..1063025 (-) | 1773 | WP_002866136.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| QMK08_RS05445 (QMK08_05445) | pglE | 1063027..1064187 (-) | 1161 | WP_283146531.1 | UDP-N-acetylbacillosamine transaminase | - |
| QMK08_RS05450 (QMK08_05450) | pglD | 1064285..1064875 (-) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| QMK08_RS05455 (QMK08_05455) | pglC | 1064862..1065464 (-) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| QMK08_RS05460 (QMK08_05460) | pglA | 1065457..1066587 (-) | 1131 | WP_002866138.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| QMK08_RS05465 (QMK08_05465) | pglB | 1066597..1068738 (-) | 2142 | WP_002866139.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| QMK08_RS05470 (QMK08_05470) | pglJ | 1068742..1069839 (-) | 1098 | WP_002866140.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| QMK08_RS05475 (QMK08_05475) | pglI | 1069827..1070756 (-) | 930 | WP_002866141.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| QMK08_RS05480 (QMK08_05480) | pglH | 1070749..1071828 (-) | 1080 | WP_072238645.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| QMK08_RS05485 (QMK08_05485) | pglK | 1071825..1073519 (-) | 1695 | WP_002877063.1 | ABC-type lipopolysaccharide transporter PglK | - |
| QMK08_RS05490 (QMK08_05490) | galE | 1073513..1074499 (-) | 987 | WP_002877060.1 | UDP-glucose 4-epimerase GalE | - |
| QMK08_RS05495 (QMK08_05495) | - | 1074558..1075352 (-) | 795 | WP_002877059.1 | 3'-5' exonuclease | - |
| QMK08_RS05500 (QMK08_05500) | waaC | 1075418..1076446 (+) | 1029 | WP_002866145.1 | lipopolysaccharide heptosyltransferase I | - |
| QMK08_RS05505 (QMK08_05505) | htrB | 1076436..1077314 (+) | 879 | WP_002801091.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| QMK08_RS05510 (QMK08_05510) | - | 1077311..1078012 (+) | 702 | WP_002877056.1 | glycosyltransferase family 2 protein | - |
| QMK08_RS05515 (QMK08_05515) | rfbA | 1078023..1078901 (+) | 879 | WP_002877054.1 | glucose-1-phosphate thymidylyltransferase RfbA | - |
| QMK08_RS05520 (QMK08_05520) | rfbB | 1078901..1079932 (+) | 1032 | WP_002860226.1 | dTDP-glucose 4,6-dehydratase | - |
| QMK08_RS05525 (QMK08_05525) | wlaRA | 1079935..1080384 (+) | 450 | WP_002912325.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA | - |
| QMK08_RS05530 (QMK08_05530) | wlaRB | 1080381..1080785 (+) | 405 | WP_002860228.1 | class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB | - |
| QMK08_RS05535 (QMK08_05535) | - | 1080775..1081218 (+) | 444 | WP_002860229.1 | acyltransferase | - |
| QMK08_RS05540 (QMK08_05540) | - | 1081240..1081767 (+) | 528 | WP_002876185.1 | GNAT family N-acetyltransferase | - |
| QMK08_RS05545 (QMK08_05545) | - | 1082064..1083140 (+) | 1077 | WP_002876186.1 | glycosyltransferase family A protein | - |
| QMK08_RS05550 (QMK08_05550) | wlaRG | 1083137..1084222 (+) | 1086 | WP_002876187.1 | class E lipooligosaccharide biosynthesis aminotransferase WlaRG | - |
| QMK08_RS05555 (QMK08_05555) | - | 1084254..1085507 (-) | 1254 | WP_002876189.1 | DUF2972 domain-containing protein | - |
| QMK08_RS05560 (QMK08_05560) | - | 1085504..1086526 (-) | 1023 | WP_002876190.1 | hypothetical protein | - |
| QMK08_RS05565 (QMK08_05565) | - | 1086597..1087370 (+) | 774 | WP_002866160.1 | glycosyltransferase family 25 protein | - |
| QMK08_RS05570 (QMK08_05570) | wlaTB | 1087363..1088319 (+) | 957 | WP_002860237.1 | class E lipooligosaccharide biosynthesis protein WlaTB | - |
| QMK08_RS05575 (QMK08_05575) | wlaTC | 1088316..1089275 (+) | 960 | WP_002860238.1 | class E lipooligosaccharide biosynthesis protein WlaTC | - |
| QMK08_RS05580 (QMK08_05580) | - | 1089278..1090096 (-) | 819 | WP_070240931.1 | glycosyltransferase family 2 protein | - |
| QMK08_RS05585 (QMK08_05585) | waaF | 1090155..1091105 (+) | 951 | WP_053869672.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| QMK08_RS05590 (QMK08_05590) | - | 1091157..1092656 (+) | 1500 | WP_002877116.1 | MBOAT family O-acyltransferase | - |
| QMK08_RS05595 (QMK08_05595) | - | 1092804..1093781 (+) | 978 | WP_002866168.1 | hypothetical protein | - |
| QMK08_RS05600 (QMK08_05600) | gmhA | 1093785..1094345 (-) | 561 | WP_002877119.1 | D-sedoheptulose 7-phosphate isomerase | - |
| QMK08_RS05605 (QMK08_05605) | rfaE1 | 1094342..1095727 (-) | 1386 | WP_002877121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| QMK08_RS05610 (QMK08_05610) | rfaD | 1095720..1096673 (-) | 954 | WP_002877123.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| QMK08_RS05615 (QMK08_05615) | gmhB | 1096674..1097234 (-) | 561 | WP_002877124.1 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| QMK08_RS05620 (QMK08_05620) | - | 1097316..1097618 (+) | 303 | WP_002852762.1 | cytochrome c | - |
| QMK08_RS05625 (QMK08_05625) | ccoS | 1097641..1097847 (-) | 207 | WP_002877126.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
| QMK08_RS05630 (QMK08_05630) | - | 1097844..1100201 (-) | 2358 | WP_072238644.1 | heavy metal translocating P-type ATPase | - |
| QMK08_RS05635 (QMK08_05635) | rho | 1100311..1101609 (+) | 1299 | WP_002853705.1 | transcription termination factor Rho | - |
| QMK08_RS05640 (QMK08_05640) | dnaX | 1101613..1103142 (+) | 1530 | WP_053869673.1 | DNA polymerase III subunit gamma/tau | - |
| QMK08_RS05645 (QMK08_05645) | - | 1103139..1103660 (-) | 522 | WP_002853472.1 | DUF2165 family protein | - |
| QMK08_RS05650 (QMK08_05650) | copA | 1103732..1105831 (-) | 2100 | WP_002866176.1 | copper-translocating P-type ATPase CopA | - |
| QMK08_RS05655 (QMK08_05655) | - | 1105831..1106025 (-) | 195 | WP_002870481.1 | cation transporter | - |
| QMK08_RS05660 (QMK08_05660) | czcD | 1106015..1106965 (-) | 951 | WP_002866178.1 | CDF family cation-efflux transporter CzcD | - |
| QMK08_RS05665 (QMK08_05665) | - | 1107039..1107302 (-) | 264 | WP_002866179.1 | zf-TFIIB domain-containing protein | - |
| QMK08_RS05670 (QMK08_05670) | - | 1107373..1107867 (-) | 495 | WP_002853757.1 | threonine/serine exporter family protein | - |
| QMK08_RS05675 (QMK08_05675) | - | 1107864..1108640 (-) | 777 | WP_002866180.1 | threonine/serine exporter ThrE family protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36215.73 Da Isoelectric Point: 10.2575
>NTDB_id=831758 QMK08_RS05585 WP_053869672.1 1090155..1091105(+) (waaF) [Campylobacter jejuni strain SKBC41]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISTVYKIKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEEIKKLSTP
Nucleotide
Download Length: 951 bp
>NTDB_id=831758 QMK08_RS05585 WP_053869672.1 1090155..1091105(+) (waaF) [Campylobacter jejuni strain SKBC41]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTACGGTTTATAAGATAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAGC
ACCATAAATGCATGAAAGATCTAAAGCCTGAAAAGGTGATAGAAGAAATTAAAAAATTAAGCACTCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
93.61 |
99.051 |
0.927 |