Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | QMK08_RS05225 | Genome accession | NZ_CP125386 |
| Coordinates | 1019959..1020261 (+) | Length | 100 a.a. |
| NCBI ID | WP_002853046.1 | Uniprot ID | Q0P9H7 |
| Organism | Campylobacter jejuni strain SKBC41 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1014959..1025261
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMK08_RS05200 (QMK08_05200) | rpsR | 1015321..1015581 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| QMK08_RS05205 (QMK08_05205) | lon | 1015642..1018017 (-) | 2376 | WP_070240934.1 | endopeptidase La | - |
| QMK08_RS05210 (QMK08_05210) | - | 1018034..1018681 (-) | 648 | WP_002877748.1 | outer membrane protein assembly factor BamD | - |
| QMK08_RS05215 (QMK08_05215) | fliW | 1018842..1019231 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| QMK08_RS05220 (QMK08_05220) | proC | 1019231..1019962 (+) | 732 | WP_002932769.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| QMK08_RS05225 (QMK08_05225) | ctsT | 1019959..1020261 (+) | 303 | WP_002853046.1 | type II secretion system protein | Machinery gene |
| QMK08_RS05230 (QMK08_05230) | - | 1020258..1020920 (+) | 663 | WP_002858296.1 | hypothetical protein | - |
| QMK08_RS05235 (QMK08_05235) | - | 1020917..1021369 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| QMK08_RS05240 (QMK08_05240) | hemD | 1021366..1021995 (-) | 630 | WP_002858312.1 | uroporphyrinogen-III synthase | - |
| QMK08_RS05245 (QMK08_05245) | thiE | 1021973..1022605 (-) | 633 | WP_057042821.1 | thiamine phosphate synthase | - |
| QMK08_RS05250 (QMK08_05250) | thiD | 1022595..1023407 (-) | 813 | WP_002864255.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| QMK08_RS05255 (QMK08_05255) | - | 1023404..1024090 (-) | 687 | WP_038817202.1 | endonuclease III domain-containing protein | - |
| QMK08_RS05260 (QMK08_05260) | - | 1024087..1024849 (-) | 763 | Protein_1018 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12162.27 Da Isoelectric Point: 6.2957
>NTDB_id=831756 QMK08_RS05225 WP_002853046.1 1019959..1020261(+) (ctsT) [Campylobacter jejuni strain SKBC41]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=831756 QMK08_RS05225 WP_002853046.1 1019959..1020261(+) (ctsT) [Campylobacter jejuni strain SKBC41]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGACGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
99 |
100 |
0.99 |