Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   U0542_RS11935 Genome accession   NZ_CP139831
Coordinates   2304020..2304346 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   A0A151YUA4
Organism   Acinetobacter baumannii strain Nord12-3     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2299020..2309346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS11910 (U0542_11910) - 2299511..2300278 (+) 768 WP_000897420.1 uroporphyrinogen-III synthase -
  U0542_RS11915 (U0542_11915) - 2300287..2301126 (+) 840 WP_001230201.1 hypothetical protein -
  U0542_RS11920 (U0542_11920) - 2301136..2302329 (+) 1194 WP_000681771.1 hypothetical protein -
  U0542_RS11925 (U0542_11925) - 2302337..2302777 (+) 441 WP_000661569.1 thioesterase family protein -
  U0542_RS11930 (U0542_11930) - 2302859..2303791 (+) 933 WP_001043692.1 IS5-like element ISAba13 family transposase -
  U0542_RS11935 (U0542_11935) hns 2304020..2304346 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  U0542_RS11940 (U0542_11940) gspN 2304679..2305421 (+) 743 Protein_2169 type II secretion system protein N -
  U0542_RS11945 (U0542_11945) - 2305421..2306257 (+) 837 WP_000870031.1 type II secretion system protein N -
  U0542_RS11950 (U0542_11950) gspD 2306299..2308575 (+) 2277 WP_001196426.1 type II secretion system secretin GspD -
  U0542_RS11955 (U0542_11955) - 2308616..2309245 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=831752 U0542_RS11935 WP_000801427.1 2304020..2304346(+) (hns) [Acinetobacter baumannii strain Nord12-3]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=831752 U0542_RS11935 WP_000801427.1 2304020..2304346(+) (hns) [Acinetobacter baumannii strain Nord12-3]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterProScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151YUA4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1