Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   QMK09_RS07705 Genome accession   NZ_CP125383
Coordinates   1490399..1491007 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain SKBC1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1485399..1496007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS07680 (QMK09_07680) - 1485556..1486320 (+) 765 WP_002851318.1 TIGR02757 family protein -
  QMK09_RS07685 (QMK09_07685) - 1486324..1487088 (+) 765 WP_002871861.1 TSUP family transporter -
  QMK09_RS07690 (QMK09_07690) ctsF 1487081..1488262 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  QMK09_RS07695 (QMK09_07695) ctsE 1488259..1489818 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  QMK09_RS07700 (QMK09_07700) ctsX 1489808..1490395 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  QMK09_RS07705 (QMK09_07705) ctsP 1490399..1491007 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMK09_RS07710 (QMK09_07710) ctsD 1491000..1492412 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK09_RS07715 (QMK09_07715) ctsR 1492390..1492701 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=831742 QMK09_RS07705 WP_002851464.1 1490399..1491007(-) (ctsP) [Campylobacter jejuni strain SKBC1]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=831742 QMK09_RS07705 WP_002851464.1 1490399..1491007(-) (ctsP) [Campylobacter jejuni strain SKBC1]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995