Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   U0542_RS09970 Genome accession   NZ_CP139831
Coordinates   1908322..1909587 (-) Length   421 a.a.
NCBI ID   WP_001285403.1    Uniprot ID   A0A0D5YDM8
Organism   Acinetobacter baumannii strain Nord12-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1903322..1914587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS09940 (U0542_09940) pncA 1903547..1904191 (-) 645 WP_001985076.1 bifunctional nicotinamidase/pyrazinamidase -
  U0542_RS09945 (U0542_09945) dapA 1904521..1905414 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  U0542_RS09950 (U0542_09950) - 1905430..1906032 (+) 603 WP_001177091.1 hypothetical protein -
  U0542_RS09955 (U0542_09955) purC 1906069..1906788 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  U0542_RS09960 (U0542_09960) - 1906978..1907181 (+) 204 WP_000418560.1 hypothetical protein -
  U0542_RS09965 (U0542_09965) - 1907467..1908306 (+) 840 WP_000349500.1 formate/nitrite transporter family protein -
  U0542_RS09970 (U0542_09970) rarA 1908322..1909587 (-) 1266 WP_001285403.1 replication-associated recombination protein A Machinery gene
  U0542_RS09975 (U0542_09975) - 1909693..1910862 (-) 1170 WP_001990830.1 PQQ-dependent sugar dehydrogenase -
  U0542_RS09980 (U0542_09980) - 1910975..1911433 (-) 459 WP_000102818.1 YcgN family cysteine cluster protein -
  U0542_RS09985 (U0542_09985) - 1911628..1911786 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  U0542_RS09990 (U0542_09990) - 1911958..1912695 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  U0542_RS09995 (U0542_09995) - 1912880..1913242 (+) 363 WP_000130110.1 HIT family protein -
  U0542_RS10000 (U0542_10000) mutY 1913383..1914417 (+) 1035 WP_001113866.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46975.69 Da        Isoelectric Point: 5.8354

>NTDB_id=831744 U0542_RS09970 WP_001285403.1 1908322..1909587(-) (rarA) [Acinetobacter baumannii strain Nord12-3]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQM
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=831744 U0542_RS09970 WP_001285403.1 1908322..1909587(-) (rarA) [Acinetobacter baumannii strain Nord12-3]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGATG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCTGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375