Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   QMK09_RS07715 Genome accession   NZ_CP125383
Coordinates   1492390..1492701 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain SKBC1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1487390..1497701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS07695 (QMK09_07695) ctsE 1488259..1489818 (-) 1560 WP_011812800.1 GspE/PulE family protein Machinery gene
  QMK09_RS07700 (QMK09_07700) ctsX 1489808..1490395 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  QMK09_RS07705 (QMK09_07705) ctsP 1490399..1491007 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  QMK09_RS07710 (QMK09_07710) ctsD 1491000..1492412 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  QMK09_RS07715 (QMK09_07715) ctsR 1492390..1492701 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  QMK09_RS07720 (QMK09_07720) nifJ 1492725..1496285 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  QMK09_RS07725 (QMK09_07725) - 1496377..1497018 (-) 642 WP_002858866.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=831744 QMK09_RS07715 WP_002855438.1 1492390..1492701(-) (ctsR) [Campylobacter jejuni strain SKBC1]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=831744 QMK09_RS07715 WP_002855438.1 1492390..1492701(-) (ctsR) [Campylobacter jejuni strain SKBC1]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1