Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QMK09_RS07085 Genome accession   NZ_CP125383
Coordinates   1358393..1359361 (+) Length   322 a.a.
NCBI ID   WP_002872671.1    Uniprot ID   Q0P8Q7
Organism   Campylobacter jejuni strain SKBC1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1353393..1364361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS07060 (QMK09_07060) cdsA 1354303..1355028 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  QMK09_RS07065 (QMK09_07065) - 1355037..1355375 (-) 339 WP_002852397.1 hypothetical protein -
  QMK09_RS07070 (QMK09_07070) - 1355377..1356684 (-) 1308 WP_002864240.1 NFACT family protein -
  QMK09_RS07075 (QMK09_07075) mobA 1356746..1357321 (+) 576 WP_052785283.1 molybdenum cofactor guanylyltransferase -
  QMK09_RS07080 (QMK09_07080) pldA 1357318..1358307 (+) 990 WP_052794428.1 phospholipase A -
  QMK09_RS07085 (QMK09_07085) ceuB 1358393..1359361 (+) 969 WP_002872671.1 ABC transporter permease Machinery gene
  QMK09_RS07090 (QMK09_07090) ceuC 1359354..1360292 (+) 939 WP_002854141.1 iron chelate uptake ABC transporter family permease subunit -
  QMK09_RS07095 (QMK09_07095) ceuD 1360289..1361044 (+) 756 WP_002858409.1 ABC transporter ATP-binding protein -
  QMK09_RS07100 (QMK09_07100) ceuB 1361057..1362049 (+) 993 WP_002852385.1 enterochelin ABC transporter substrate-binding protein CeuB -
  QMK09_RS07110 (QMK09_07110) - 1362275..1362829 (-) 555 WP_002855904.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35469.40 Da        Isoelectric Point: 9.6678

>NTDB_id=831736 QMK09_RS07085 WP_002872671.1 1358393..1359361(+) (ceuB) [Campylobacter jejuni strain SKBC1]
MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQLEIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALCGALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKV
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=831736 QMK09_RS07085 WP_002872671.1 1358393..1359361(+) (ceuB) [Campylobacter jejuni strain SKBC1]
TTGTTTTTTAAGCATATATTGAGTTTAAAAGTGCTTATAGCTTTACTTTTATTCTTTGGAATGATAAGTTTATTTATAGG
AGTTATCAGTATCAATGTAAAAGATATTCTTAATCTTAACTCCACTCAACTAGAAATCATAACTCTCACAAGAATTCCTA
GACTTATAGCGATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCTCCAACTACGGCAGGAACTATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGAGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTTTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGTTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGGATTATCCCTTTTTTAGGGCTAATTATCCCAAATTTAGTAGCTCTTTATCTAGGTGATAATCTTAG
AAAAAATCTTATCTATATAGCACTTTGTGGAGCTTTGTTTTTACTTGTTTGCGATATCATTTCAAGACTTGTTATCTTTC
CTTTTGAAATGCCTTTAAGTATCACTACAGGTGTTTTAGGGTCTTTAATCTTTATCTTTCTTTTACTAAAAAGGAAAGTT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P8Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

99.068

100

0.991