Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   QMK09_RS07040 Genome accession   NZ_CP125383
Coordinates   1350320..1350835 (-) Length   171 a.a.
NCBI ID   WP_040966638.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC1     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1345320..1355835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS07025 (QMK09_07025) - 1345432..1347249 (-) 1818 WP_096777907.1 motility associated factor glycosyltransferase family protein -
  QMK09_RS07030 (QMK09_07030) - 1347246..1349069 (-) 1824 WP_052836772.1 motility associated factor glycosyltransferase family protein -
  QMK09_RS07035 (QMK09_07035) - 1349079..1350320 (-) 1242 WP_040992484.1 DUF2920 family protein -
  QMK09_RS07040 (QMK09_07040) ctsG 1350320..1350835 (-) 516 WP_040966638.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  QMK09_RS07045 (QMK09_07045) tsaD 1350836..1351843 (-) 1008 WP_002864246.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  QMK09_RS07050 (QMK09_07050) - 1351840..1353234 (-) 1395 WP_002865638.1 M99 family carboxypeptidase catalytic domain-containing protein -
  QMK09_RS07055 (QMK09_07055) dxr 1353236..1354306 (-) 1071 WP_002864243.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  QMK09_RS07060 (QMK09_07060) cdsA 1354303..1355028 (-) 726 WP_002869557.1 phosphatidate cytidylyltransferase -
  QMK09_RS07065 (QMK09_07065) - 1355037..1355375 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18706.61 Da        Isoelectric Point: 6.4682

>NTDB_id=831735 QMK09_RS07040 WP_040966638.1 1350320..1350835(-) (ctsG) [Campylobacter jejuni strain SKBC1]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNEASKNVIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=831735 QMK09_RS07040 WP_040966638.1 1350320..1350835(-) (ctsG) [Campylobacter jejuni strain SKBC1]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGTTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936