Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QMK09_RS06080 Genome accession   NZ_CP125383
Coordinates   1156187..1157146 (+) Length   319 a.a.
NCBI ID   WP_002875425.1    Uniprot ID   -
Organism   Campylobacter jejuni strain SKBC1     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1136486..1166482 1156187..1157146 within 0


Gene organization within MGE regions


Location: 1136486..1166482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMK09_RS05990 (QMK09_05990) pglI 1136486..1137415 (-) 930 WP_002852770.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  QMK09_RS05995 (QMK09_05995) pglH 1137408..1138487 (-) 1080 WP_218980408.1 glycosyltransferase -
  QMK09_RS06000 (QMK09_06000) pglK 1138484..1140178 (-) 1695 WP_002871717.1 ABC-type lipopolysaccharide transporter PglK -
  QMK09_RS06005 (QMK09_06005) galE 1140172..1141158 (-) 987 WP_002853529.1 UDP-glucose 4-epimerase GalE -
  QMK09_RS06010 (QMK09_06010) - 1141216..1142010 (-) 795 WP_002875164.1 3'-5' exonuclease -
  QMK09_RS06015 (QMK09_06015) waaC 1142076..1143104 (+) 1029 WP_002858077.1 lipopolysaccharide heptosyltransferase I -
  QMK09_RS06020 (QMK09_06020) htrB 1143094..1143981 (+) 888 WP_002858051.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  QMK09_RS06025 (QMK09_06025) - 1143978..1145525 (+) 1548 WP_002875163.1 glycosyltransferase -
  QMK09_RS06030 (QMK09_06030) - 1145529..1146701 (+) 1173 WP_096777903.1 glycosyltransferase family 2 protein -
  QMK09_RS06035 (QMK09_06035) - 1146685..1147680 (-) 996 WP_002858358.1 capsular polysaccharide synthesis protein -
  QMK09_RS06040 (QMK09_06040) - 1147738..1148907 (+) 1170 WP_052791328.1 glycosyltransferase family 2 protein -
  QMK09_RS06045 (QMK09_06045) wlaN 1148896..1149804 (-) 909 WP_199363404.1 beta-1,3 galactosyltransferase -
  QMK09_RS06050 (QMK09_06050) cstIII 1149859..1150743 (+) 885 WP_002858290.1 alpha-2,3-sialyltransferase -
  QMK09_RS06055 (QMK09_06055) neuB1 1150724..1151755 (+) 1032 WP_002858213.1 sialic acid synthase -
  QMK09_RS06060 (QMK09_06060) neuC 1151752..1152867 (+) 1116 WP_002858400.1 UDP-N-acetylglucosamine 2-epimerase -
  QMK09_RS09445 - 1152864..1153778 (+) 915 Protein_1180 beta-1,4-N-acetylgalactosaminyltransferase -
  QMK09_RS09450 - 1153812..1154474 (+) 663 WP_032596875.1 acylneuraminate cytidylyltransferase -
  QMK09_RS06070 (QMK09_06070) - 1154469..1155320 (-) 852 WP_032114306.1 glycosyltransferase -
  QMK09_RS06075 (QMK09_06075) waaV 1155304..1156128 (-) 825 WP_002858096.1 glycosyltransferase family 2 protein -
  QMK09_RS06080 (QMK09_06080) waaF 1156187..1157146 (+) 960 WP_002875425.1 lipopolysaccharide heptosyltransferase II Regulator
  QMK09_RS06085 (QMK09_06085) gmhA 1157127..1157687 (-) 561 WP_002875424.1 D-sedoheptulose 7-phosphate isomerase -
  QMK09_RS06090 (QMK09_06090) rfaE1 1157684..1159069 (-) 1386 WP_002858114.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  QMK09_RS06095 (QMK09_06095) rfaD 1159062..1160015 (-) 954 WP_052794327.1 ADP-glyceromanno-heptose 6-epimerase -
  QMK09_RS06100 (QMK09_06100) gmhB 1160012..1160576 (-) 565 Protein_1188 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  QMK09_RS06105 (QMK09_06105) - 1160657..1160959 (+) 303 WP_002852762.1 cytochrome c -
  QMK09_RS06110 (QMK09_06110) ccoS 1160982..1161188 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  QMK09_RS06115 (QMK09_06115) - 1161185..1163542 (-) 2358 WP_079461021.1 heavy metal translocating P-type ATPase -
  QMK09_RS06120 (QMK09_06120) rho 1163651..1164949 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  QMK09_RS06125 (QMK09_06125) dnaX 1164953..1166482 (+) 1530 WP_052794325.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36734.30 Da        Isoelectric Point: 10.2412

>NTDB_id=831731 QMK09_RS06080 WP_002875425.1 1156187..1157146(+) (waaF) [Campylobacter jejuni strain SKBC1]
MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=831731 QMK09_RS06080 WP_002875425.1 1156187..1157146(+) (waaF) [Campylobacter jejuni strain SKBC1]
ATGAAAATTTTTATACATCTTCCCACCTGGTTAGGCGATACGGTAATGGCTTCACCTGCTTTATACACTATAAAAGAACA
TTTTAAAGATGCTCAGTTTATCCTTTATGGTTCTTTTGTTTCTACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTCTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGTA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTTAGTATAAAAGCTCATTTTAAGGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGATATTTT
AATCTTTGGTGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAATGCAAAATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTGAAAAAGTGATAGAACAGGCTAAAAATTTACTTAAAAACTCTCATCTATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1